Search Kitaake

Mutant Information

Mutant Name	FN1357-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1357-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (26.67% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2224230 G-C Hetero INTERGENIC
SBS Chr1 11481100 C-T Hetero INTERGENIC
SBS Chr1 12583415 A-T Hetero INTERGENIC
SBS Chr1 24671189 C-T Hetero INTERGENIC
SBS Chr1 37916067 T-C Hetero INTERGENIC
SBS Chr2 28528217 A-G Hetero UTR_3_PRIME
SBS Chr3 5372711 T-A Hetero INTERGENIC
SBS Chr3 13467513 A-T Hetero INTERGENIC
SBS Chr3 34429636 C-A Hetero INTERGENIC
SBS Chr3 36371825 A-G Hetero INTERGENIC
SBS Chr4 5268841 A-T Hetero INTERGENIC
SBS Chr4 18665438 G-T Hetero INTERGENIC
SBS Chr4 35597215 T-C Homo INTERGENIC
SBS Chr6 18588130 T-C Homo INTERGENIC
SBS Chr6 18622342 G-A Homo INTERGENIC
SBS Chr6 18622343 C-T Homo INTERGENIC
SBS Chr6 25000942 C-T Hetero INTERGENIC
SBS Chr6 25000943 A-G Hetero INTERGENIC
SBS Chr7 7968983 T-A Hetero INTERGENIC
SBS Chr7 26010664 G-A Hetero INTERGENIC
SBS Chr9 654946 A-G Hetero INTERGENIC
SBS Chr9 13320429 A-T Hetero INTRON
SBS Chr9 13509068 G-A Hetero INTERGENIC
SBS Chr9 22611951 T-A Hetero INTRON
SBS Chr10 11077862 T-C Homo INTERGENIC
SBS Chr11 17038815 T-A Hetero INTRON
SBS Chr11 22159873 T-A Hetero INTERGENIC
SBS Chr11 27150296 T-G Hetero INTERGENIC
SBS Chr12 2187260 C-T Hetero INTERGENIC
SBS Chr12 4715129 T-A Hetero INTERGENIC
SBS Chr12 18596249 A-T Homo NON_SYNONYMOUS_CODING OsKitaake12g136900

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 11484001 11586000 101999 7
Deletion Chr11 12459798 12459799 1
Deletion Chr7 17069714 17069716 2
Deletion Chr8 17264253 17264339 86
Deletion Chr6 19761121 19761122 1
Deletion Chr3 24507995 24507997 2
Deletion Chr2 29670107 29670110 3
Deletion Chr4 35410511 35410520 9

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21400340 21400343 2
Insertion Chr3 2319303 2319305 1
Insertion Chr11 12147613 12147616 2
Insertion Chr11 29195544 29195547 2
Insertion Chr8 22826309 22826311 1
Insertion Chr11 8637653 8637728 74

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 3935703 4866755 2
Inversion Chr4 5248785 5491211 OsKitaake04g025600
Inversion Chr7 27572219 27632352 2
Inversion Chr7 27572232 27632353 2
Inversion Chr2 31062268 31075223 OsKitaake02g317300
Inversion Chr2 31062278 31075229 OsKitaake02g317300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 11587334 Chr1 3935702 OsKitaake01g053100
Translocation Chr8 14997340 Chr1 4866759 OsKitaake01g065100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2224230	G-C	Hetero	INTERGENIC
SBS	Chr1	11481100	C-T	Hetero	INTERGENIC
SBS	Chr1	12583415	A-T	Hetero	INTERGENIC
SBS	Chr1	24671189	C-T	Hetero	INTERGENIC
SBS	Chr1	37916067	T-C	Hetero	INTERGENIC
SBS	Chr2	28528217	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	5372711	T-A	Hetero	INTERGENIC
SBS	Chr3	13467513	A-T	Hetero	INTERGENIC
SBS	Chr3	34429636	C-A	Hetero	INTERGENIC
SBS	Chr3	36371825	A-G	Hetero	INTERGENIC
SBS	Chr4	5268841	A-T	Hetero	INTERGENIC
SBS	Chr4	18665438	G-T	Hetero	INTERGENIC
SBS	Chr4	35597215	T-C	Homo	INTERGENIC
SBS	Chr6	18588130	T-C	Homo	INTERGENIC
SBS	Chr6	18622342	G-A	Homo	INTERGENIC
SBS	Chr6	18622343	C-T	Homo	INTERGENIC
SBS	Chr6	25000942	C-T	Hetero	INTERGENIC
SBS	Chr6	25000943	A-G	Hetero	INTERGENIC
SBS	Chr7	7968983	T-A	Hetero	INTERGENIC
SBS	Chr7	26010664	G-A	Hetero	INTERGENIC
SBS	Chr9	654946	A-G	Hetero	INTERGENIC
SBS	Chr9	13320429	A-T	Hetero	INTRON
SBS	Chr9	13509068	G-A	Hetero	INTERGENIC
SBS	Chr9	22611951	T-A	Hetero	INTRON
SBS	Chr10	11077862	T-C	Homo	INTERGENIC
SBS	Chr11	17038815	T-A	Hetero	INTRON
SBS	Chr11	22159873	T-A	Hetero	INTERGENIC
SBS	Chr11	27150296	T-G	Hetero	INTERGENIC
SBS	Chr12	2187260	C-T	Hetero	INTERGENIC
SBS	Chr12	4715129	T-A	Hetero	INTERGENIC
SBS	Chr12	18596249	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g136900

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	11484001	11586000	101999	7
Deletion	Chr11	12459798	12459799	1
Deletion	Chr7	17069714	17069716	2
Deletion	Chr8	17264253	17264339	86
Deletion	Chr6	19761121	19761122	1
Deletion	Chr3	24507995	24507997	2
Deletion	Chr2	29670107	29670110	3
Deletion	Chr4	35410511	35410520	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3935703	4866755	2
Inversion	Chr4	5248785	5491211	OsKitaake04g025600
Inversion	Chr7	27572219	27632352	2
Inversion	Chr7	27572232	27632353	2
Inversion	Chr2	31062268	31075223	OsKitaake02g317300
Inversion	Chr2	31062278	31075229	OsKitaake02g317300

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes