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Mutant Information

Mutant Name	FN1358-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1358-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16456519 G-A Homo INTERGENIC
SBS Chr1 16712165 C-G Homo NON_SYNONYMOUS_CODING OsKitaake01g177600
SBS Chr1 28635314 C-T Homo INTERGENIC
SBS Chr1 36054709 G-A Hetero INTERGENIC
SBS Chr1 36888459 C-T Hetero INTERGENIC
SBS Chr2 417355 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g005900
SBS Chr2 15934879 C-T Hetero INTERGENIC
SBS Chr2 24043652 T-A Hetero INTERGENIC
SBS Chr2 26882234 T-C Hetero INTERGENIC
SBS Chr2 30899394 C-T Hetero INTERGENIC
SBS Chr3 14722706 A-C Hetero INTERGENIC
SBS Chr3 24244207 C-T Hetero INTERGENIC
SBS Chr4 14628197 C-T Hetero INTERGENIC
SBS Chr5 4847504 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g054200
SBS Chr5 20573113 T-C Homo INTERGENIC
SBS Chr5 24844685 G-C Hetero INTERGENIC
SBS Chr6 1092852 C-A Homo INTERGENIC
SBS Chr6 5862695 T-C Hetero INTRON
SBS Chr6 5876127 A-G Hetero INTERGENIC
SBS Chr6 14784879 A-C Hetero INTERGENIC
SBS Chr6 16093924 C-T Hetero INTERGENIC
SBS Chr6 28116461 A-G Hetero INTERGENIC
SBS Chr7 13689968 T-C Hetero INTERGENIC
SBS Chr7 24953552 G-T Hetero INTERGENIC
SBS Chr9 19770617 C-A Homo INTERGENIC
SBS Chr11 17413278 G-A Homo INTERGENIC
SBS Chr11 22768439 G-A Hetero INTERGENIC
SBS Chr11 22885470 A-C Hetero INTERGENIC
SBS Chr12 18057871 A-T Homo NON_SYNONYMOUS_CODING OsKitaake12g133100
SBS Chr12 18057873 C-T Homo SYNONYMOUS_CODING
SBS Chr12 21978606 T-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 62771 63478 707
Deletion Chr1 277220 277222 2
Deletion Chr6 3086481 3086488 7
Deletion Chr3 3143398 3143577 179
Deletion Chr1 5955860 5955861 1
Deletion Chr3 8375691 8375698 7 OsKitaake03g115300
Deletion Chr10 8686434 8686596 162
Deletion Chr4 9480430 9480602 172
Deletion Chr7 10893861 10893863 2
Deletion Chr5 14004870 14004876 6
Deletion Chr1 19421434 19421436 2
Deletion Chr6 20987282 20987302 20
Deletion Chr11 27015490 27015491 1
Deletion Chr3 30487703 30487705 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13129988 13129991 2
Insertion Chr2 1728830 1728833 2
Insertion Chr3 29711027 29711030 2
Insertion Chr7 26780373 26780376 2
Insertion Chr11 23329670 23329673 2
Insertion Chr12 22688053 22688056 2
Insertion Chr7 4976579 4976582 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 15803445 15809314 OsKitaake09g112800
Inversion Chr9 15803459 15809307 OsKitaake09g112800
Inversion Chr8 23289366 23362836
Inversion Chr8 23289377 23362838

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 11907646 Chr1 36978841 OsKitaake01g394150
Translocation Chr5 11908892 Chr1 36978841 OsKitaake01g394150

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16456519	G-A	Homo	INTERGENIC
SBS	Chr1	16712165	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g177600
SBS	Chr1	28635314	C-T	Homo	INTERGENIC
SBS	Chr1	36054709	G-A	Hetero	INTERGENIC
SBS	Chr1	36888459	C-T	Hetero	INTERGENIC
SBS	Chr2	417355	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g005900
SBS	Chr2	15934879	C-T	Hetero	INTERGENIC
SBS	Chr2	24043652	T-A	Hetero	INTERGENIC
SBS	Chr2	26882234	T-C	Hetero	INTERGENIC
SBS	Chr2	30899394	C-T	Hetero	INTERGENIC
SBS	Chr3	14722706	A-C	Hetero	INTERGENIC
SBS	Chr3	24244207	C-T	Hetero	INTERGENIC
SBS	Chr4	14628197	C-T	Hetero	INTERGENIC
SBS	Chr5	4847504	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g054200
SBS	Chr5	20573113	T-C	Homo	INTERGENIC
SBS	Chr5	24844685	G-C	Hetero	INTERGENIC
SBS	Chr6	1092852	C-A	Homo	INTERGENIC
SBS	Chr6	5862695	T-C	Hetero	INTRON
SBS	Chr6	5876127	A-G	Hetero	INTERGENIC
SBS	Chr6	14784879	A-C	Hetero	INTERGENIC
SBS	Chr6	16093924	C-T	Hetero	INTERGENIC
SBS	Chr6	28116461	A-G	Hetero	INTERGENIC
SBS	Chr7	13689968	T-C	Hetero	INTERGENIC
SBS	Chr7	24953552	G-T	Hetero	INTERGENIC
SBS	Chr9	19770617	C-A	Homo	INTERGENIC
SBS	Chr11	17413278	G-A	Homo	INTERGENIC
SBS	Chr11	22768439	G-A	Hetero	INTERGENIC
SBS	Chr11	22885470	A-C	Hetero	INTERGENIC
SBS	Chr12	18057871	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g133100
SBS	Chr12	18057873	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr12	21978606	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	62771	63478	707
Deletion	Chr1	277220	277222	2
Deletion	Chr6	3086481	3086488	7
Deletion	Chr3	3143398	3143577	179
Deletion	Chr1	5955860	5955861	1
Deletion	Chr3	8375691	8375698	7	OsKitaake03g115300
Deletion	Chr10	8686434	8686596	162
Deletion	Chr4	9480430	9480602	172
Deletion	Chr7	10893861	10893863	2
Deletion	Chr5	14004870	14004876	6
Deletion	Chr1	19421434	19421436	2
Deletion	Chr6	20987282	20987302	20
Deletion	Chr11	27015490	27015491	1
Deletion	Chr3	30487703	30487705	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	15803445	15809314	OsKitaake09g112800
Inversion	Chr9	15803459	15809307	OsKitaake09g112800
Inversion	Chr8	23289366	23362836
Inversion	Chr8	23289377	23362838

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes