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Mutant Information

Mutant Name	FN1363-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1363-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19160331 G-A Hetero INTERGENIC
SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr2 19038415 C-T Hetero INTERGENIC
SBS Chr2 19510026 A-G Hetero INTERGENIC
SBS Chr2 22215059 A-T Homo INTERGENIC
SBS Chr2 26116140 C-T Homo INTRON
SBS Chr2 28307559 C-A Hetero INTERGENIC
SBS Chr3 17024499 C-T Hetero INTERGENIC
SBS Chr3 28493511 C-T Hetero INTRON
SBS Chr3 36642379 C-T Hetero INTERGENIC
SBS Chr4 7488237 G-T Hetero INTERGENIC
SBS Chr5 4005984 C-G Hetero INTERGENIC
SBS Chr5 21677838 G-C Hetero INTERGENIC
SBS Chr6 440850 G-A Hetero INTRON
SBS Chr6 2092048 T-A Hetero INTERGENIC
SBS Chr6 4224373 A-G Hetero INTERGENIC
SBS Chr6 15168512 C-G Homo NON_SYNONYMOUS_CODING OsKitaake06g151000
SBS Chr7 2644343 T-A Hetero INTERGENIC
SBS Chr7 28568938 T-G Hetero INTRON
SBS Chr8 2399221 T-A Hetero INTERGENIC
SBS Chr8 11637587 A-G Hetero INTERGENIC
SBS Chr8 12867080 G-A Hetero INTERGENIC
SBS Chr8 28627825 C-T Hetero INTERGENIC
SBS Chr9 6706223 A-T Hetero INTERGENIC
SBS Chr9 14649186 C-T Homo INTERGENIC
SBS Chr9 15869589 T-A Homo INTERGENIC
SBS Chr10 686460 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g004700
SBS Chr10 4532491 G-A Hetero INTERGENIC
SBS Chr11 8799779 C-T Hetero INTERGENIC
SBS Chr11 10737128 T-C Hetero INTERGENIC
SBS Chr11 12758452 C-T Hetero INTERGENIC
SBS Chr11 17223884 G-A Hetero INTERGENIC
SBS Chr11 25825521 G-A Hetero INTERGENIC
SBS Chr12 1124978 C-T Hetero INTERGENIC
SBS Chr12 8252876 G-A Hetero INTERGENIC
SBS Chr12 9862260 G-T Hetero INTERGENIC
SBS Chr12 9862261 C-T Hetero INTERGENIC
SBS Chr12 11988838 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g104800

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1483146 1483151 5
Deletion Chr12 4152861 4152862 1
Deletion Chr7 4647990 4647996 6
Deletion Chr8 5746845 5746848 3
Deletion Chr12 5930343 5930351 8
Deletion Chr7 6076343 6076344 1
Deletion Chr10 10872699 10872824 125
Deletion Chr12 11652227 11652538 311
Deletion Chr6 15117767 15117768 1
Deletion Chr1 15184790 15184791 1
Deletion Chr12 18551126 18551127 1
Deletion Chr6 19500001 19605000 104999 2
Deletion Chr8 20056295 20056296 1
Deletion Chr10 20991813 20991814 1
Deletion Chr10 23230229 23230231 2
Deletion Chr5 24546742 24546759 17
Deletion Chr4 31214173 31214192 19
Deletion Chr1 38446525 38446531 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 21993985 21993988 2
Insertion Chr3 25453214 25453217 2
Insertion Chr5 29763446 29763449 2
Insertion Chr7 26240051 26240054 2
Insertion Chr1 12807083 12807086 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 27778421 27897221

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19160331	G-A	Hetero	INTERGENIC
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr2	19038415	C-T	Hetero	INTERGENIC
SBS	Chr2	19510026	A-G	Hetero	INTERGENIC
SBS	Chr2	22215059	A-T	Homo	INTERGENIC
SBS	Chr2	26116140	C-T	Homo	INTRON
SBS	Chr2	28307559	C-A	Hetero	INTERGENIC
SBS	Chr3	17024499	C-T	Hetero	INTERGENIC
SBS	Chr3	28493511	C-T	Hetero	INTRON
SBS	Chr3	36642379	C-T	Hetero	INTERGENIC
SBS	Chr4	7488237	G-T	Hetero	INTERGENIC
SBS	Chr5	4005984	C-G	Hetero	INTERGENIC
SBS	Chr5	21677838	G-C	Hetero	INTERGENIC
SBS	Chr6	440850	G-A	Hetero	INTRON
SBS	Chr6	2092048	T-A	Hetero	INTERGENIC
SBS	Chr6	4224373	A-G	Hetero	INTERGENIC
SBS	Chr6	15168512	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g151000
SBS	Chr7	2644343	T-A	Hetero	INTERGENIC
SBS	Chr7	28568938	T-G	Hetero	INTRON
SBS	Chr8	2399221	T-A	Hetero	INTERGENIC
SBS	Chr8	11637587	A-G	Hetero	INTERGENIC
SBS	Chr8	12867080	G-A	Hetero	INTERGENIC
SBS	Chr8	28627825	C-T	Hetero	INTERGENIC
SBS	Chr9	6706223	A-T	Hetero	INTERGENIC
SBS	Chr9	14649186	C-T	Homo	INTERGENIC
SBS	Chr9	15869589	T-A	Homo	INTERGENIC
SBS	Chr10	686460	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g004700
SBS	Chr10	4532491	G-A	Hetero	INTERGENIC
SBS	Chr11	8799779	C-T	Hetero	INTERGENIC
SBS	Chr11	10737128	T-C	Hetero	INTERGENIC
SBS	Chr11	12758452	C-T	Hetero	INTERGENIC
SBS	Chr11	17223884	G-A	Hetero	INTERGENIC
SBS	Chr11	25825521	G-A	Hetero	INTERGENIC
SBS	Chr12	1124978	C-T	Hetero	INTERGENIC
SBS	Chr12	8252876	G-A	Hetero	INTERGENIC
SBS	Chr12	9862260	G-T	Hetero	INTERGENIC
SBS	Chr12	9862261	C-T	Hetero	INTERGENIC
SBS	Chr12	11988838	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g104800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1483146	1483151	5
Deletion	Chr12	4152861	4152862	1
Deletion	Chr7	4647990	4647996	6
Deletion	Chr8	5746845	5746848	3
Deletion	Chr12	5930343	5930351	8
Deletion	Chr7	6076343	6076344	1
Deletion	Chr10	10872699	10872824	125
Deletion	Chr12	11652227	11652538	311
Deletion	Chr6	15117767	15117768	1
Deletion	Chr1	15184790	15184791	1
Deletion	Chr12	18551126	18551127	1
Deletion	Chr6	19500001	19605000	104999	2
Deletion	Chr8	20056295	20056296	1
Deletion	Chr10	20991813	20991814	1
Deletion	Chr10	23230229	23230231	2
Deletion	Chr5	24546742	24546759	17
Deletion	Chr4	31214173	31214192	19
Deletion	Chr1	38446525	38446531	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	27778421	27897221

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes