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Mutant Information

Mutant Name	FN1368-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1368-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4545642 A-C Hetero INTERGENIC
SBS Chr1 12355034 T-A Hetero INTERGENIC
SBS Chr1 14183023 G-A Hetero INTERGENIC
SBS Chr1 17572933 C-T Hetero INTERGENIC
SBS Chr1 20360368 G-A Hetero INTERGENIC
SBS Chr1 27209864 G-A Hetero INTERGENIC
SBS Chr1 36544503 A-T Hetero INTERGENIC
SBS Chr2 211904 A-T Homo INTRON
SBS Chr2 4918050 A-C Homo INTERGENIC
SBS Chr2 5613005 G-A Hetero INTERGENIC
SBS Chr2 20772052 A-G Homo INTRON
SBS Chr2 30445190 A-T Hetero INTRON
SBS Chr3 10288271 G-T Homo INTERGENIC
SBS Chr3 18567240 T-C Homo INTRON
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 29138032 G-A Hetero INTERGENIC
SBS Chr3 29362228 A-C Hetero INTERGENIC
SBS Chr4 1485966 C-A Hetero INTERGENIC
SBS Chr4 6780122 A-G Hetero INTERGENIC
SBS Chr4 6845370 T-C Homo INTERGENIC
SBS Chr4 11842315 G-A Hetero INTERGENIC
SBS Chr4 21307253 A-C Hetero UTR_3_PRIME
SBS Chr5 4163649 T-A Hetero INTERGENIC
SBS Chr6 9043042 A-C Homo INTERGENIC
SBS Chr7 6611413 C-T Hetero INTERGENIC
SBS Chr7 7621907 G-A Homo INTERGENIC
SBS Chr7 17685861 T-C Hetero UTR_3_PRIME
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr9 2229934 G-A Hetero INTERGENIC
SBS Chr10 1072348 G-A Hetero INTERGENIC
SBS Chr10 7642165 T-C Hetero INTERGENIC
SBS Chr10 7840964 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g049801
SBS Chr10 8308349 C-A Hetero INTERGENIC
SBS Chr10 9580278 G-A Hetero INTERGENIC
SBS Chr11 11960885 G-A Hetero INTERGENIC
SBS Chr11 14416525 G-C Hetero INTERGENIC
SBS Chr11 17088349 G-A Hetero INTERGENIC
SBS Chr11 20170841 C-T Hetero INTERGENIC
SBS Chr12 7975443 C-T Hetero INTERGENIC
SBS Chr12 19235556 A-T Homo INTERGENIC
SBS Chr12 24022345 G-C Hetero INTERGENIC
SBS Chr12 25844531 A-G Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 5196340 5196345 5
Deletion Chr7 6825441 6825442 1
Deletion Chr1 8814992 8814993 1
Deletion Chr12 13383963 13383971 8
Deletion Chr12 20099689 20099690 1
Deletion Chr8 25689143 25689154 11
Deletion Chr4 27290101 27290102 1 OsKitaake04g198701
Deletion Chr2 34230457 34230463 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 10965009 10965012 2
Insertion Chr8 11655385 11655388 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4545642	A-C	Hetero	INTERGENIC
SBS	Chr1	12355034	T-A	Hetero	INTERGENIC
SBS	Chr1	14183023	G-A	Hetero	INTERGENIC
SBS	Chr1	17572933	C-T	Hetero	INTERGENIC
SBS	Chr1	20360368	G-A	Hetero	INTERGENIC
SBS	Chr1	27209864	G-A	Hetero	INTERGENIC
SBS	Chr1	36544503	A-T	Hetero	INTERGENIC
SBS	Chr2	211904	A-T	Homo	INTRON
SBS	Chr2	4918050	A-C	Homo	INTERGENIC
SBS	Chr2	5613005	G-A	Hetero	INTERGENIC
SBS	Chr2	20772052	A-G	Homo	INTRON
SBS	Chr2	30445190	A-T	Hetero	INTRON
SBS	Chr3	10288271	G-T	Homo	INTERGENIC
SBS	Chr3	18567240	T-C	Homo	INTRON
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	29138032	G-A	Hetero	INTERGENIC
SBS	Chr3	29362228	A-C	Hetero	INTERGENIC
SBS	Chr4	1485966	C-A	Hetero	INTERGENIC
SBS	Chr4	6780122	A-G	Hetero	INTERGENIC
SBS	Chr4	6845370	T-C	Homo	INTERGENIC
SBS	Chr4	11842315	G-A	Hetero	INTERGENIC
SBS	Chr4	21307253	A-C	Hetero	UTR_3_PRIME
SBS	Chr5	4163649	T-A	Hetero	INTERGENIC
SBS	Chr6	9043042	A-C	Homo	INTERGENIC
SBS	Chr7	6611413	C-T	Hetero	INTERGENIC
SBS	Chr7	7621907	G-A	Homo	INTERGENIC
SBS	Chr7	17685861	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr9	2229934	G-A	Hetero	INTERGENIC
SBS	Chr10	1072348	G-A	Hetero	INTERGENIC
SBS	Chr10	7642165	T-C	Hetero	INTERGENIC
SBS	Chr10	7840964	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g049801
SBS	Chr10	8308349	C-A	Hetero	INTERGENIC
SBS	Chr10	9580278	G-A	Hetero	INTERGENIC
SBS	Chr11	11960885	G-A	Hetero	INTERGENIC
SBS	Chr11	14416525	G-C	Hetero	INTERGENIC
SBS	Chr11	17088349	G-A	Hetero	INTERGENIC
SBS	Chr11	20170841	C-T	Hetero	INTERGENIC
SBS	Chr12	7975443	C-T	Hetero	INTERGENIC
SBS	Chr12	19235556	A-T	Homo	INTERGENIC
SBS	Chr12	24022345	G-C	Hetero	INTERGENIC
SBS	Chr12	25844531	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	5196340	5196345	5
Deletion	Chr7	6825441	6825442	1
Deletion	Chr1	8814992	8814993	1
Deletion	Chr12	13383963	13383971	8
Deletion	Chr12	20099689	20099690	1
Deletion	Chr8	25689143	25689154	11
Deletion	Chr4	27290101	27290102	1	OsKitaake04g198701
Deletion	Chr2	34230457	34230463	6

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes