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Mutant Information

Mutant Name	FN1369-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1369-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (6.67% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 15221949 C-T Hetero INTERGENIC
SBS Chr2 27144299 A-G Hetero INTERGENIC
SBS Chr2 28994022 G-A Homo INTERGENIC
SBS Chr2 31628076 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g321880
SBS Chr3 3449574 C-T Hetero INTERGENIC
SBS Chr3 4390286 T-C Hetero INTERGENIC
SBS Chr3 7433444 G-A Hetero INTERGENIC
SBS Chr3 8878108 G-A Hetero SPLICE_SITE_REGION
SBS Chr3 31838572 G-A Homo INTERGENIC
SBS Chr4 1606536 G-A Hetero INTERGENIC
SBS Chr4 14212772 C-T Hetero INTERGENIC
SBS Chr4 20051419 C-T Hetero INTRON
SBS Chr5 16673412 G-A Hetero INTERGENIC
SBS Chr5 20421967 T-A Hetero INTERGENIC
SBS Chr7 5627091 C-T Hetero INTERGENIC
SBS Chr7 8416589 T-A Hetero INTRON
SBS Chr8 3589460 A-G Homo INTERGENIC
SBS Chr8 22995609 T-A Homo UTR_3_PRIME
SBS Chr8 23840003 T-A Hetero INTERGENIC
SBS Chr9 883717 A-G Homo INTRON
SBS Chr9 10184006 T-G Homo SYNONYMOUS_CODING
SBS Chr10 1077326 A-T Homo INTRON
SBS Chr10 8896462 G-A Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 261074 261076 2
Deletion Chr9 894001 917000 22999 2
Deletion Chr12 7919732 7919734 2
Deletion Chr12 8742830 8742832 2
Deletion Chr1 14231001 14259000 27999 3
Deletion Chr2 22378001 22850000 471999 59
Deletion Chr8 23923268 23923269 1
Deletion Chr2 24228083 24228084 1
Deletion Chr1 31881936 31881939 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 893157 893160 2
Insertion Chr6 19135584 19135587 2
Insertion Chr4 18345247 18345250 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 894571 Chr6 7851929
Translocation Chr9 916156 Chr6 8956642 OsKitaake06g108000
Translocation Chr12 12068551 Chr9 16251981 OsKitaake09g117200
Translocation Chr12 12068552 Chr9 16249072 OsKitaake09g117200
Translocation Chr2 26312226 Chr1 32297795 2
Translocation Chr2 26312237 Chr1 32302849 OsKitaake02g261900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	15221949	C-T	Hetero	INTERGENIC
SBS	Chr2	27144299	A-G	Hetero	INTERGENIC
SBS	Chr2	28994022	G-A	Homo	INTERGENIC
SBS	Chr2	31628076	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g321880
SBS	Chr3	3449574	C-T	Hetero	INTERGENIC
SBS	Chr3	4390286	T-C	Hetero	INTERGENIC
SBS	Chr3	7433444	G-A	Hetero	INTERGENIC
SBS	Chr3	8878108	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr3	31838572	G-A	Homo	INTERGENIC
SBS	Chr4	1606536	G-A	Hetero	INTERGENIC
SBS	Chr4	14212772	C-T	Hetero	INTERGENIC
SBS	Chr4	20051419	C-T	Hetero	INTRON
SBS	Chr5	16673412	G-A	Hetero	INTERGENIC
SBS	Chr5	20421967	T-A	Hetero	INTERGENIC
SBS	Chr7	5627091	C-T	Hetero	INTERGENIC
SBS	Chr7	8416589	T-A	Hetero	INTRON
SBS	Chr8	3589460	A-G	Homo	INTERGENIC
SBS	Chr8	22995609	T-A	Homo	UTR_3_PRIME
SBS	Chr8	23840003	T-A	Hetero	INTERGENIC
SBS	Chr9	883717	A-G	Homo	INTRON
SBS	Chr9	10184006	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr10	1077326	A-T	Homo	INTRON
SBS	Chr10	8896462	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	261074	261076	2
Deletion	Chr9	894001	917000	22999	2
Deletion	Chr12	7919732	7919734	2
Deletion	Chr12	8742830	8742832	2
Deletion	Chr1	14231001	14259000	27999	3
Deletion	Chr2	22378001	22850000	471999	59
Deletion	Chr8	23923268	23923269	1
Deletion	Chr2	24228083	24228084	1
Deletion	Chr1	31881936	31881939	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	894571	Chr6	7851929
Translocation	Chr9	916156	Chr6	8956642	OsKitaake06g108000
Translocation	Chr12	12068551	Chr9	16251981	OsKitaake09g117200
Translocation	Chr12	12068552	Chr9	16249072	OsKitaake09g117200
Translocation	Chr2	26312226	Chr1	32297795	2
Translocation	Chr2	26312237	Chr1	32302849	OsKitaake02g261900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes