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Mutant Information

Mutant Name	FN1371-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1371-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5101955 C-T Hetero INTERGENIC
SBS Chr1 15850581 C-T Hetero INTERGENIC
SBS Chr1 26043285 T-A Homo INTERGENIC
SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr1 38105864 G-A Homo INTERGENIC
SBS Chr1 40007994 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g433300
SBS Chr2 10193025 C-A Homo INTERGENIC
SBS Chr2 13473899 C-T Hetero INTERGENIC
SBS Chr3 10315909 A-G Hetero INTRON
SBS Chr3 20705945 T-A Hetero INTERGENIC
SBS Chr4 5658228 G-A Homo INTERGENIC
SBS Chr4 10513378 C-G Hetero INTERGENIC
SBS Chr4 16318299 G-A Hetero INTERGENIC
SBS Chr4 18831487 C-T Hetero INTRON
SBS Chr4 32072065 G-A Homo INTERGENIC
SBS Chr4 32272266 G-A Homo INTERGENIC
SBS Chr5 7926031 A-G Homo INTERGENIC
SBS Chr5 8214495 A-T Homo INTERGENIC
SBS Chr5 18565893 C-A Hetero STOP_LOST OsKitaake05g145300
SBS Chr5 26813194 C-A Hetero INTRON
SBS Chr6 13025472 T-A Hetero INTERGENIC
SBS Chr6 13025473 C-A Hetero INTERGENIC
SBS Chr6 17779309 G-A Homo INTERGENIC
SBS Chr6 23975457 G-A Hetero INTERGENIC
SBS Chr7 22368597 C-G Hetero INTERGENIC
SBS Chr8 7211643 G-T Hetero INTERGENIC
SBS Chr8 10804197 A-G Homo INTERGENIC
SBS Chr8 28627825 C-T Homo INTERGENIC
SBS Chr9 7957032 C-G Homo INTERGENIC
SBS Chr9 11902928 A-G Homo INTERGENIC
SBS Chr10 13236684 C-A Hetero INTERGENIC
SBS Chr11 2315770 A-G Hetero INTERGENIC
SBS Chr11 7093199 C-G Homo INTERGENIC
SBS Chr11 7791114 C-G Hetero INTERGENIC
SBS Chr11 18246247 T-A Hetero INTERGENIC
SBS Chr11 29535531 T-A Hetero INTERGENIC
SBS Chr12 6725010 G-A Hetero INTERGENIC
SBS Chr12 8463342 G-T Hetero INTERGENIC
SBS Chr12 15938904 T-C Hetero INTERGENIC
SBS Chr12 16119271 C-T Hetero INTERGENIC
SBS Chr12 19351919 C-T Homo SYNONYMOUS_CODING

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 3406149 3406150 1
Deletion Chr4 5654652 5654657 5
Deletion Chr11 10787711 10787821 110
Deletion Chr1 12405895 12405897 2
Deletion Chr1 14331001 14415000 83999 7
Deletion Chr1 14417001 14479000 61999 4
Deletion Chr2 14903758 14903759 1
Deletion Chr12 22169213 22169214 1 OsKitaake12g174700
Deletion Chr11 25541001 25549000 7999 OsKitaake11g206100
Deletion Chr1 26012741 26012756 15
Deletion Chr4 28102802 28102803 1
Deletion Chr4 29811990 29812000 10
Deletion Chr2 36470624 36470630 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8641744 8641747 2
Insertion Chr5 12094247 12094249 1
Insertion Chr1 12807083 12807086 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 15556313 15699347
Inversion Chr6 15556324 15699344

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5101955	C-T	Hetero	INTERGENIC
SBS	Chr1	15850581	C-T	Hetero	INTERGENIC
SBS	Chr1	26043285	T-A	Homo	INTERGENIC
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr1	38105864	G-A	Homo	INTERGENIC
SBS	Chr1	40007994	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g433300
SBS	Chr2	10193025	C-A	Homo	INTERGENIC
SBS	Chr2	13473899	C-T	Hetero	INTERGENIC
SBS	Chr3	10315909	A-G	Hetero	INTRON
SBS	Chr3	20705945	T-A	Hetero	INTERGENIC
SBS	Chr4	5658228	G-A	Homo	INTERGENIC
SBS	Chr4	10513378	C-G	Hetero	INTERGENIC
SBS	Chr4	16318299	G-A	Hetero	INTERGENIC
SBS	Chr4	18831487	C-T	Hetero	INTRON
SBS	Chr4	32072065	G-A	Homo	INTERGENIC
SBS	Chr4	32272266	G-A	Homo	INTERGENIC
SBS	Chr5	7926031	A-G	Homo	INTERGENIC
SBS	Chr5	8214495	A-T	Homo	INTERGENIC
SBS	Chr5	18565893	C-A	Hetero	STOP_LOST	OsKitaake05g145300
SBS	Chr5	26813194	C-A	Hetero	INTRON
SBS	Chr6	13025472	T-A	Hetero	INTERGENIC
SBS	Chr6	13025473	C-A	Hetero	INTERGENIC
SBS	Chr6	17779309	G-A	Homo	INTERGENIC
SBS	Chr6	23975457	G-A	Hetero	INTERGENIC
SBS	Chr7	22368597	C-G	Hetero	INTERGENIC
SBS	Chr8	7211643	G-T	Hetero	INTERGENIC
SBS	Chr8	10804197	A-G	Homo	INTERGENIC
SBS	Chr8	28627825	C-T	Homo	INTERGENIC
SBS	Chr9	7957032	C-G	Homo	INTERGENIC
SBS	Chr9	11902928	A-G	Homo	INTERGENIC
SBS	Chr10	13236684	C-A	Hetero	INTERGENIC
SBS	Chr11	2315770	A-G	Hetero	INTERGENIC
SBS	Chr11	7093199	C-G	Homo	INTERGENIC
SBS	Chr11	7791114	C-G	Hetero	INTERGENIC
SBS	Chr11	18246247	T-A	Hetero	INTERGENIC
SBS	Chr11	29535531	T-A	Hetero	INTERGENIC
SBS	Chr12	6725010	G-A	Hetero	INTERGENIC
SBS	Chr12	8463342	G-T	Hetero	INTERGENIC
SBS	Chr12	15938904	T-C	Hetero	INTERGENIC
SBS	Chr12	16119271	C-T	Hetero	INTERGENIC
SBS	Chr12	19351919	C-T	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	3406149	3406150	1
Deletion	Chr4	5654652	5654657	5
Deletion	Chr11	10787711	10787821	110
Deletion	Chr1	12405895	12405897	2
Deletion	Chr1	14331001	14415000	83999	7
Deletion	Chr1	14417001	14479000	61999	4
Deletion	Chr2	14903758	14903759	1
Deletion	Chr12	22169213	22169214	1	OsKitaake12g174700
Deletion	Chr11	25541001	25549000	7999	OsKitaake11g206100
Deletion	Chr1	26012741	26012756	15
Deletion	Chr4	28102802	28102803	1
Deletion	Chr4	29811990	29812000	10
Deletion	Chr2	36470624	36470630	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	15556313	15699347
Inversion	Chr6	15556324	15699344

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes