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Mutant Information

Mutant Name	FN1372-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1372-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9790648 C-G Homo INTRON
SBS Chr1 16443528 T-C Hetero INTERGENIC
SBS Chr1 17841759 A-G Hetero INTERGENIC
SBS Chr2 15240300 T-A Homo INTERGENIC
SBS Chr2 15872261 A-T Homo INTERGENIC
SBS Chr2 25520050 G-A Homo INTERGENIC
SBS Chr2 36249640 A-G Homo INTERGENIC
SBS Chr3 19524200 A-T Homo INTERGENIC
SBS Chr4 7567263 G-A Homo INTERGENIC
SBS Chr4 31785836 C-T Hetero INTERGENIC
SBS Chr7 2340127 C-T Homo INTERGENIC
SBS Chr7 3915243 G-A Hetero INTERGENIC
SBS Chr7 19012103 G-A Hetero INTERGENIC
SBS Chr8 7647295 C-T Hetero INTERGENIC
SBS Chr8 12650946 T-A Homo INTERGENIC
SBS Chr9 8481755 G-A Hetero INTERGENIC
SBS Chr9 12047846 G-C Hetero INTERGENIC
SBS Chr11 9162232 G-C Hetero INTERGENIC
SBS Chr11 15430429 G-A Hetero INTERGENIC
SBS Chr11 23927806 C-T Hetero INTERGENIC
SBS Chr12 2747719 C-T Homo INTERGENIC
SBS Chr12 23330112 T-C Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2808235 2808236 1
Deletion Chr1 4880919 4881280 361
Deletion Chr3 12504146 12504151 5
Deletion Chr4 12989076 12989088 12
Deletion Chr5 14436001 14473000 36999 4
Deletion Chr7 25800007 25800014 7
Deletion Chr2 35881110 35881117 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17642860 17642863 2 OsKitaake02g176900
Insertion Chr7 1193916 1193919 2 OsKitaake07g016600
Insertion Chr9 15777002 15777005 2
Insertion Chr1 38196203 38196210 6 OsKitaake01g407400

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 10107570 Chr3 22516390
Translocation Chr4 10107838 Chr3 22516481
Translocation Chr12 12125066 Chr3 9474390 OsKitaake12g105700
Translocation Chr12 12162004 Chr5 21984002 OsKitaake05g179300
Translocation Chr12 12162238 Chr5 21984460 OsKitaake05g179300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9790648	C-G	Homo	INTRON
SBS	Chr1	16443528	T-C	Hetero	INTERGENIC
SBS	Chr1	17841759	A-G	Hetero	INTERGENIC
SBS	Chr2	15240300	T-A	Homo	INTERGENIC
SBS	Chr2	15872261	A-T	Homo	INTERGENIC
SBS	Chr2	25520050	G-A	Homo	INTERGENIC
SBS	Chr2	36249640	A-G	Homo	INTERGENIC
SBS	Chr3	19524200	A-T	Homo	INTERGENIC
SBS	Chr4	7567263	G-A	Homo	INTERGENIC
SBS	Chr4	31785836	C-T	Hetero	INTERGENIC
SBS	Chr7	2340127	C-T	Homo	INTERGENIC
SBS	Chr7	3915243	G-A	Hetero	INTERGENIC
SBS	Chr7	19012103	G-A	Hetero	INTERGENIC
SBS	Chr8	7647295	C-T	Hetero	INTERGENIC
SBS	Chr8	12650946	T-A	Homo	INTERGENIC
SBS	Chr9	8481755	G-A	Hetero	INTERGENIC
SBS	Chr9	12047846	G-C	Hetero	INTERGENIC
SBS	Chr11	9162232	G-C	Hetero	INTERGENIC
SBS	Chr11	15430429	G-A	Hetero	INTERGENIC
SBS	Chr11	23927806	C-T	Hetero	INTERGENIC
SBS	Chr12	2747719	C-T	Homo	INTERGENIC
SBS	Chr12	23330112	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2808235	2808236	1
Deletion	Chr1	4880919	4881280	361
Deletion	Chr3	12504146	12504151	5
Deletion	Chr4	12989076	12989088	12
Deletion	Chr5	14436001	14473000	36999	4
Deletion	Chr7	25800007	25800014	7
Deletion	Chr2	35881110	35881117	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	10107570	Chr3	22516390
Translocation	Chr4	10107838	Chr3	22516481
Translocation	Chr12	12125066	Chr3	9474390	OsKitaake12g105700
Translocation	Chr12	12162004	Chr5	21984002	OsKitaake05g179300
Translocation	Chr12	12162238	Chr5	21984460	OsKitaake05g179300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes