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Mutant Information

Mutant Name	FN1373-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1373-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 4944784 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g068800
SBS Chr2 18305407 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g181600
SBS Chr2 22453095 C-T Hetero INTRON
SBS Chr2 36940641 G-A Hetero INTERGENIC
SBS Chr3 14637200 C-T Homo INTERGENIC
SBS Chr3 24578338 G-C Hetero INTERGENIC
SBS Chr4 2637687 A-G Hetero INTERGENIC
SBS Chr4 15943892 G-A Hetero INTERGENIC
SBS Chr4 22149307 T-C Hetero INTERGENIC
SBS Chr5 2219375 A-G Hetero UTR_3_PRIME
SBS Chr5 5701281 C-T Hetero INTERGENIC
SBS Chr5 10771666 C-T Hetero INTERGENIC
SBS Chr5 24569638 C-A Hetero INTERGENIC
SBS Chr6 9146111 C-T Hetero INTERGENIC
SBS Chr6 16395275 G-A Hetero INTERGENIC
SBS Chr6 20649915 G-A Hetero INTERGENIC
SBS Chr6 21547229 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 9076470 G-A Homo INTERGENIC
SBS Chr7 17537342 A-G Hetero INTERGENIC
SBS Chr7 21167515 G-A Hetero INTERGENIC
SBS Chr8 1523321 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g019000
SBS Chr8 4813067 C-G Homo INTERGENIC
SBS Chr8 8671223 C-T Homo INTERGENIC
SBS Chr8 11383074 A-G Hetero INTERGENIC
SBS Chr8 18481079 A-T Hetero INTERGENIC
SBS Chr8 18481080 T-A Homo INTERGENIC
SBS Chr8 28504995 C-G Hetero INTERGENIC
SBS Chr9 35340 G-A Homo INTERGENIC
SBS Chr9 1582326 C-A Hetero INTERGENIC
SBS Chr10 4554694 C-A Hetero INTRON
SBS Chr11 9858430 G-A Homo INTERGENIC
SBS Chr11 10565293 G-A Homo INTRON
SBS Chr11 24807073 T-A Homo INTERGENIC
SBS Chr12 2888466 C-T Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3962691 3962693 2 OsKitaake05g047700
Deletion Chr4 5441273 5441275 2
Deletion Chr12 6234001 6593000 358999 36
Deletion Chr7 6949573 6949577 4
Deletion Chr12 9547693 9547709 16
Deletion Chr12 9876659 9876805 146
Deletion Chr7 10281290 10281304 14
Deletion Chr7 10283070 10283071 1
Deletion Chr10 10915198 10915201 3
Deletion Chr12 11343477 11343485 8 OsKitaake12g102301
Deletion Chr8 13454306 13454308 2 OsKitaake08g110460
Deletion Chr2 18519001 18530000 10999
Deletion Chr3 21792015 21792023 8
Deletion Chr2 33802001 33820000 17999 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 5378127 5378135 7

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 17830132 18601728
Inversion Chr2 23040034 23124367 OsKitaake02g225100
Inversion Chr2 23040038 23124366 OsKitaake02g225100
Inversion Chr2 33531851 33802885 OsKitaake02g349900

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 25776214 Chr2 35228725 OsKitaake05g226700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	4944784	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g068800
SBS	Chr2	18305407	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g181600
SBS	Chr2	22453095	C-T	Hetero	INTRON
SBS	Chr2	36940641	G-A	Hetero	INTERGENIC
SBS	Chr3	14637200	C-T	Homo	INTERGENIC
SBS	Chr3	24578338	G-C	Hetero	INTERGENIC
SBS	Chr4	2637687	A-G	Hetero	INTERGENIC
SBS	Chr4	15943892	G-A	Hetero	INTERGENIC
SBS	Chr4	22149307	T-C	Hetero	INTERGENIC
SBS	Chr5	2219375	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	5701281	C-T	Hetero	INTERGENIC
SBS	Chr5	10771666	C-T	Hetero	INTERGENIC
SBS	Chr5	24569638	C-A	Hetero	INTERGENIC
SBS	Chr6	9146111	C-T	Hetero	INTERGENIC
SBS	Chr6	16395275	G-A	Hetero	INTERGENIC
SBS	Chr6	20649915	G-A	Hetero	INTERGENIC
SBS	Chr6	21547229	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	9076470	G-A	Homo	INTERGENIC
SBS	Chr7	17537342	A-G	Hetero	INTERGENIC
SBS	Chr7	21167515	G-A	Hetero	INTERGENIC
SBS	Chr8	1523321	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g019000
SBS	Chr8	4813067	C-G	Homo	INTERGENIC
SBS	Chr8	8671223	C-T	Homo	INTERGENIC
SBS	Chr8	11383074	A-G	Hetero	INTERGENIC
SBS	Chr8	18481079	A-T	Hetero	INTERGENIC
SBS	Chr8	18481080	T-A	Homo	INTERGENIC
SBS	Chr8	28504995	C-G	Hetero	INTERGENIC
SBS	Chr9	35340	G-A	Homo	INTERGENIC
SBS	Chr9	1582326	C-A	Hetero	INTERGENIC
SBS	Chr10	4554694	C-A	Hetero	INTRON
SBS	Chr11	9858430	G-A	Homo	INTERGENIC
SBS	Chr11	10565293	G-A	Homo	INTRON
SBS	Chr11	24807073	T-A	Homo	INTERGENIC
SBS	Chr12	2888466	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3962691	3962693	2	OsKitaake05g047700
Deletion	Chr4	5441273	5441275	2
Deletion	Chr12	6234001	6593000	358999	36
Deletion	Chr7	6949573	6949577	4
Deletion	Chr12	9547693	9547709	16
Deletion	Chr12	9876659	9876805	146
Deletion	Chr7	10281290	10281304	14
Deletion	Chr7	10283070	10283071	1
Deletion	Chr10	10915198	10915201	3
Deletion	Chr12	11343477	11343485	8	OsKitaake12g102301
Deletion	Chr8	13454306	13454308	2	OsKitaake08g110460
Deletion	Chr2	18519001	18530000	10999
Deletion	Chr3	21792015	21792023	8
Deletion	Chr2	33802001	33820000	17999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	17830132	18601728
Inversion	Chr2	23040034	23124367	OsKitaake02g225100
Inversion	Chr2	23040038	23124366	OsKitaake02g225100
Inversion	Chr2	33531851	33802885	OsKitaake02g349900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes