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Mutant Information

Mutant Name	FN1374-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1374-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14473156 C-G Homo INTERGENIC
SBS Chr1 19170565 T-C Homo INTERGENIC
SBS Chr1 19779319 G-A Hetero INTERGENIC
SBS Chr2 13753849 T-A Hetero INTERGENIC
SBS Chr2 17040994 A-G Hetero INTERGENIC
SBS Chr2 24492807 G-A Homo SYNONYMOUS_CODING
SBS Chr2 37070234 T-G Hetero INTERGENIC
SBS Chr4 6902205 C-T Hetero INTERGENIC
SBS Chr4 21736300 G-T Homo INTERGENIC
SBS Chr5 7146186 C-T Hetero INTERGENIC
SBS Chr5 7539661 G-A Homo INTERGENIC
SBS Chr6 28698151 T-A Hetero INTERGENIC
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 26229232 T-A Homo INTRON
SBS Chr8 2075586 T-A Hetero INTERGENIC
SBS Chr8 25827791 G-A Homo UTR_5_PRIME
SBS Chr8 26700782 A-G Homo SYNONYMOUS_CODING
SBS Chr10 3325123 T-A Hetero INTERGENIC
SBS Chr10 3334457 G-A Hetero INTERGENIC
SBS Chr10 7056524 A-G Hetero INTERGENIC
SBS Chr10 7056533 A-T Hetero INTERGENIC
SBS Chr10 7953688 C-A Hetero INTERGENIC
SBS Chr10 21737569 T-C Homo INTRON
SBS Chr11 782455 C-A Hetero INTERGENIC
SBS Chr11 2659777 A-T Hetero INTERGENIC
SBS Chr11 6893867 A-G Hetero INTERGENIC
SBS Chr11 14954167 T-C Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 608778 608780 2
Deletion Chr4 5161001 5247000 85999 5
Deletion Chr9 9320143 9320144 1
Deletion Chr12 11716620 11716785 165
Deletion Chr6 18563536 18563543 7
Deletion Chr10 18753001 18859000 105999 7
Deletion Chr7 19827568 19827576 8
Deletion Chr6 20092927 20092932 5
Deletion Chr5 24614590 24614604 14

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 821856 821859 2
Insertion Chr7 23863974 23863977 2
Insertion Chr8 2708292 2708294 1
Insertion Chr11 25162046 25162048 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 14292182 15059670 OsKitaake09g104300
Inversion Chr9 14292190 15059687 OsKitaake09g104300
Inversion Chr4 31808123 32135236 OsKitaake04g252200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14473156	C-G	Homo	INTERGENIC
SBS	Chr1	19170565	T-C	Homo	INTERGENIC
SBS	Chr1	19779319	G-A	Hetero	INTERGENIC
SBS	Chr2	13753849	T-A	Hetero	INTERGENIC
SBS	Chr2	17040994	A-G	Hetero	INTERGENIC
SBS	Chr2	24492807	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	37070234	T-G	Hetero	INTERGENIC
SBS	Chr4	6902205	C-T	Hetero	INTERGENIC
SBS	Chr4	21736300	G-T	Homo	INTERGENIC
SBS	Chr5	7146186	C-T	Hetero	INTERGENIC
SBS	Chr5	7539661	G-A	Homo	INTERGENIC
SBS	Chr6	28698151	T-A	Hetero	INTERGENIC
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	26229232	T-A	Homo	INTRON
SBS	Chr8	2075586	T-A	Hetero	INTERGENIC
SBS	Chr8	25827791	G-A	Homo	UTR_5_PRIME
SBS	Chr8	26700782	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr10	3325123	T-A	Hetero	INTERGENIC
SBS	Chr10	3334457	G-A	Hetero	INTERGENIC
SBS	Chr10	7056524	A-G	Hetero	INTERGENIC
SBS	Chr10	7056533	A-T	Hetero	INTERGENIC
SBS	Chr10	7953688	C-A	Hetero	INTERGENIC
SBS	Chr10	21737569	T-C	Homo	INTRON
SBS	Chr11	782455	C-A	Hetero	INTERGENIC
SBS	Chr11	2659777	A-T	Hetero	INTERGENIC
SBS	Chr11	6893867	A-G	Hetero	INTERGENIC
SBS	Chr11	14954167	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	608778	608780	2
Deletion	Chr4	5161001	5247000	85999	5
Deletion	Chr9	9320143	9320144	1
Deletion	Chr12	11716620	11716785	165
Deletion	Chr6	18563536	18563543	7
Deletion	Chr10	18753001	18859000	105999	7
Deletion	Chr7	19827568	19827576	8
Deletion	Chr6	20092927	20092932	5
Deletion	Chr5	24614590	24614604	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	14292182	15059670	OsKitaake09g104300
Inversion	Chr9	14292190	15059687	OsKitaake09g104300
Inversion	Chr4	31808123	32135236	OsKitaake04g252200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes