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Mutant Information

Mutant Name	FN1382-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1382-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18824543 T-G Hetero UTR_3_PRIME
SBS Chr1 21127912 A-C Homo INTERGENIC
SBS Chr1 21556567 C-T Homo INTERGENIC
SBS Chr1 27991479 G-C Hetero INTERGENIC
SBS Chr2 4010894 G-T Hetero INTERGENIC
SBS Chr2 15009945 G-A Hetero INTERGENIC
SBS Chr2 15580283 C-T Hetero INTERGENIC
SBS Chr2 23014493 C-T Hetero INTERGENIC
SBS Chr3 687604 T-C Hetero INTRON
SBS Chr3 1903150 A-G Hetero UTR_3_PRIME
SBS Chr3 12154040 T-C Hetero INTERGENIC
SBS Chr3 13141752 T-C Hetero INTERGENIC
SBS Chr3 14931406 A-G Hetero UTR_3_PRIME
SBS Chr3 19915998 C-T Homo INTERGENIC
SBS Chr3 21673690 A-C Homo INTRON
SBS Chr3 30412424 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g319200
SBS Chr3 36857756 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g411700
SBS Chr3 37590653 C-T Hetero INTERGENIC
SBS Chr4 8576425 C-A Homo INTERGENIC
SBS Chr4 14450245 G-C Homo INTERGENIC
SBS Chr5 8905555 T-G Homo INTERGENIC
SBS Chr6 20824021 C-T Hetero INTERGENIC
SBS Chr6 25198497 G-A Homo INTERGENIC
SBS Chr6 27351164 C-T Homo INTERGENIC
SBS Chr7 1263064 G-A Homo INTERGENIC
SBS Chr7 3185814 T-G Homo INTERGENIC
SBS Chr7 8572605 T-C Hetero INTERGENIC
SBS Chr7 10232292 G-A Hetero INTERGENIC
SBS Chr8 17206993 G-T Hetero INTERGENIC
SBS Chr9 7855837 T-A Hetero INTERGENIC
SBS Chr9 13888287 G-T Hetero INTERGENIC
SBS Chr10 3830803 G-C Hetero INTERGENIC
SBS Chr10 13469671 T-A Hetero INTERGENIC
SBS Chr11 8243982 G-A Hetero INTRON
SBS Chr11 9685958 C-A Hetero INTERGENIC
SBS Chr11 9685959 C-T Hetero INTERGENIC
SBS Chr12 12309589 T-A Hetero INTERGENIC
SBS Chr12 22718109 A-G Hetero INTRON
SBS Chr12 24089197 C-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1026840 1026841 1
Deletion Chr9 1537347 1537350 3 OsKitaake09g009000
Deletion Chr5 7983742 7983743 1
Deletion Chr2 13621554 13621555 1
Deletion Chr9 20178418 20178422 4
Deletion Chr11 21071793 21071795 2
Deletion Chr3 21450001 21518000 67999 5
Deletion Chr1 30787180 30787182 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16036785 16036788 2
Insertion Chr4 9392696 9392699 2
Insertion Chr11 4111498 4111501 2
Insertion Chr12 26503742 26503746 3
Insertion Chr2 27446171 27446176 4 OsKitaake02g275800

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 23922669 24068670 OsKitaake05g210900
Inversion Chr5 23923357 24068678

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 4140605 Chr1 38041595
Translocation Chr5 5769478 Chr1 38041600 OsKitaake05g061400
Translocation Chr12 12214722 Chr5 26097515
Translocation Chr6 18614844 Chr5 23922681 OsKitaake05g210900
Translocation Chr6 18706707 Chr5 23922777 OsKitaake05g210900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18824543	T-G	Hetero	UTR_3_PRIME
SBS	Chr1	21127912	A-C	Homo	INTERGENIC
SBS	Chr1	21556567	C-T	Homo	INTERGENIC
SBS	Chr1	27991479	G-C	Hetero	INTERGENIC
SBS	Chr2	4010894	G-T	Hetero	INTERGENIC
SBS	Chr2	15009945	G-A	Hetero	INTERGENIC
SBS	Chr2	15580283	C-T	Hetero	INTERGENIC
SBS	Chr2	23014493	C-T	Hetero	INTERGENIC
SBS	Chr3	687604	T-C	Hetero	INTRON
SBS	Chr3	1903150	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	12154040	T-C	Hetero	INTERGENIC
SBS	Chr3	13141752	T-C	Hetero	INTERGENIC
SBS	Chr3	14931406	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	19915998	C-T	Homo	INTERGENIC
SBS	Chr3	21673690	A-C	Homo	INTRON
SBS	Chr3	30412424	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g319200
SBS	Chr3	36857756	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g411700
SBS	Chr3	37590653	C-T	Hetero	INTERGENIC
SBS	Chr4	8576425	C-A	Homo	INTERGENIC
SBS	Chr4	14450245	G-C	Homo	INTERGENIC
SBS	Chr5	8905555	T-G	Homo	INTERGENIC
SBS	Chr6	20824021	C-T	Hetero	INTERGENIC
SBS	Chr6	25198497	G-A	Homo	INTERGENIC
SBS	Chr6	27351164	C-T	Homo	INTERGENIC
SBS	Chr7	1263064	G-A	Homo	INTERGENIC
SBS	Chr7	3185814	T-G	Homo	INTERGENIC
SBS	Chr7	8572605	T-C	Hetero	INTERGENIC
SBS	Chr7	10232292	G-A	Hetero	INTERGENIC
SBS	Chr8	17206993	G-T	Hetero	INTERGENIC
SBS	Chr9	7855837	T-A	Hetero	INTERGENIC
SBS	Chr9	13888287	G-T	Hetero	INTERGENIC
SBS	Chr10	3830803	G-C	Hetero	INTERGENIC
SBS	Chr10	13469671	T-A	Hetero	INTERGENIC
SBS	Chr11	8243982	G-A	Hetero	INTRON
SBS	Chr11	9685958	C-A	Hetero	INTERGENIC
SBS	Chr11	9685959	C-T	Hetero	INTERGENIC
SBS	Chr12	12309589	T-A	Hetero	INTERGENIC
SBS	Chr12	22718109	A-G	Hetero	INTRON
SBS	Chr12	24089197	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1026840	1026841	1
Deletion	Chr9	1537347	1537350	3	OsKitaake09g009000
Deletion	Chr5	7983742	7983743	1
Deletion	Chr2	13621554	13621555	1
Deletion	Chr9	20178418	20178422	4
Deletion	Chr11	21071793	21071795	2
Deletion	Chr3	21450001	21518000	67999	5
Deletion	Chr1	30787180	30787182	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	23922669	24068670	OsKitaake05g210900
Inversion	Chr5	23923357	24068678

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes