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Mutant Information

Mutant Name	FN1383-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1383-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7323767 G-A Hetero INTRON
SBS Chr1 8615877 G-A Hetero INTRON
SBS Chr1 18802351 T-A Homo INTRON
SBS Chr1 25741174 G-A Homo INTERGENIC
SBS Chr1 27611315 T-C Homo UTR_3_PRIME
SBS Chr2 26521835 G-A Hetero INTERGENIC
SBS Chr3 7100323 C-A Hetero INTERGENIC
SBS Chr3 8918304 A-T Homo INTRON
SBS Chr3 20522546 G-T Hetero INTERGENIC
SBS Chr3 36868442 C-A Homo INTERGENIC
SBS Chr4 12625601 C-G Hetero INTERGENIC
SBS Chr4 13659517 C-G Hetero INTERGENIC
SBS Chr5 8087530 T-C Hetero INTERGENIC
SBS Chr5 14111300 G-A Homo INTERGENIC
SBS Chr6 6476350 C-T Hetero INTERGENIC
SBS Chr8 7778711 A-G Hetero INTRON
SBS Chr8 14960667 T-A Hetero INTERGENIC
SBS Chr9 5161957 A-G Homo INTERGENIC
SBS Chr9 5876645 G-A Homo INTERGENIC
SBS Chr10 5184719 G-C Homo INTERGENIC
SBS Chr11 1844144 C-T Hetero SYNONYMOUS_STOP
SBS Chr12 13958955 G-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 417133 417138 5 OsKitaake12g005200
Deletion Chr7 1856111 1856128 17
Deletion Chr6 5281935 5281936 1 OsKitaake06g071100
Deletion Chr12 10468104 10468110 6
Deletion Chr1 11569861 11570023 162
Deletion Chr5 13902088 13902097 9
Deletion Chr2 14942121 14942122 1
Deletion Chr11 15883602 15883607 5
Deletion Chr6 22904652 22904653 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 39806197 39806200 2
Insertion Chr1 41341218 41341221 2
Insertion Chr3 25967012 25967015 2
Insertion Chr8 25598633 25598636 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7323767	G-A	Hetero	INTRON
SBS	Chr1	8615877	G-A	Hetero	INTRON
SBS	Chr1	18802351	T-A	Homo	INTRON
SBS	Chr1	25741174	G-A	Homo	INTERGENIC
SBS	Chr1	27611315	T-C	Homo	UTR_3_PRIME
SBS	Chr2	26521835	G-A	Hetero	INTERGENIC
SBS	Chr3	7100323	C-A	Hetero	INTERGENIC
SBS	Chr3	8918304	A-T	Homo	INTRON
SBS	Chr3	20522546	G-T	Hetero	INTERGENIC
SBS	Chr3	36868442	C-A	Homo	INTERGENIC
SBS	Chr4	12625601	C-G	Hetero	INTERGENIC
SBS	Chr4	13659517	C-G	Hetero	INTERGENIC
SBS	Chr5	8087530	T-C	Hetero	INTERGENIC
SBS	Chr5	14111300	G-A	Homo	INTERGENIC
SBS	Chr6	6476350	C-T	Hetero	INTERGENIC
SBS	Chr8	7778711	A-G	Hetero	INTRON
SBS	Chr8	14960667	T-A	Hetero	INTERGENIC
SBS	Chr9	5161957	A-G	Homo	INTERGENIC
SBS	Chr9	5876645	G-A	Homo	INTERGENIC
SBS	Chr10	5184719	G-C	Homo	INTERGENIC
SBS	Chr11	1844144	C-T	Hetero	SYNONYMOUS_STOP
SBS	Chr12	13958955	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	417133	417138	5	OsKitaake12g005200
Deletion	Chr7	1856111	1856128	17
Deletion	Chr6	5281935	5281936	1	OsKitaake06g071100
Deletion	Chr12	10468104	10468110	6
Deletion	Chr1	11569861	11570023	162
Deletion	Chr5	13902088	13902097	9
Deletion	Chr2	14942121	14942122	1
Deletion	Chr11	15883602	15883607	5
Deletion	Chr6	22904652	22904653	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes