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Mutant Information

Mutant Name	FN1384-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1384-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8117290 G-T Homo INTERGENIC
SBS Chr1 17763189 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g180700
SBS Chr1 25304092 G-A Hetero INTERGENIC
SBS Chr1 28736583 A-T Hetero INTERGENIC
SBS Chr1 37794529 C-T Homo INTERGENIC
SBS Chr1 38008904 C-T Hetero UTR_3_PRIME
SBS Chr1 39534550 G-A Hetero INTERGENIC
SBS Chr1 41410829 G-A Homo INTERGENIC
SBS Chr2 8799517 A-T Hetero UTR_5_PRIME
SBS Chr2 11263711 A-T Homo INTERGENIC
SBS Chr2 15003937 C-T Hetero INTERGENIC
SBS Chr2 16805291 T-A Hetero INTERGENIC
SBS Chr2 25260153 C-T Homo INTERGENIC
SBS Chr3 2253845 T-C Hetero INTERGENIC
SBS Chr3 33770955 G-T Hetero INTERGENIC
SBS Chr4 28941608 A-T Homo NON_SYNONYMOUS_CODING OsKitaake04g217800
SBS Chr5 4891696 C-A Hetero UTR_3_PRIME
SBS Chr5 16923520 T-A Homo INTERGENIC
SBS Chr5 28783808 C-A Hetero INTERGENIC
SBS Chr5 28783811 T-C Hetero INTERGENIC
SBS Chr6 3131500 G-A Homo SYNONYMOUS_CODING
SBS Chr6 14297807 C-T Homo INTERGENIC
SBS Chr6 20453454 G-A Homo INTERGENIC
SBS Chr7 6533843 T-G Homo INTERGENIC
SBS Chr8 5190034 G-T Homo INTRON
SBS Chr8 5190035 C-T Homo INTRON
SBS Chr8 29000519 T-A Hetero INTERGENIC
SBS Chr9 9523397 G-A Hetero INTERGENIC
SBS Chr9 11218157 C-A Hetero INTERGENIC
SBS Chr9 14287742 C-T Hetero INTRON
SBS Chr9 14972794 G-T Hetero INTERGENIC
SBS Chr9 17393708 A-G Hetero INTERGENIC
SBS Chr10 1198020 C-A Hetero START_LOST OsKitaake10g009000
SBS Chr10 23182409 G-A Hetero INTERGENIC
SBS Chr11 11502627 G-A Homo INTERGENIC
SBS Chr11 28015380 C-T Homo INTERGENIC
SBS Chr12 771383 T-G Hetero SYNONYMOUS_CODING
SBS Chr12 2855802 C-T Hetero INTERGENIC
SBS Chr12 11193945 G-A Hetero INTERGENIC
SBS Chr12 20622116 G-A Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 584215 584216 1
Deletion Chr5 740986 740988 2
Deletion Chr3 2316043 2316046 3
Deletion Chr1 3496749 3496757 8
Deletion Chr3 3516323 3516324 1
Deletion Chr2 7824647 7824649 2
Deletion Chr4 8221637 8221986 349 OsKitaake04g042800
Deletion Chr10 8706655 8706656 1
Deletion Chr1 9218394 9218395 1
Deletion Chr2 11185001 11293000 107999 13
Deletion Chr3 12850134 12850138 4
Deletion Chr11 14130519 14130520 1
Deletion Chr2 20550466 20550788 322
Deletion Chr5 22861873 22861875 2
Deletion Chr2 23451311 23451315 4
Deletion Chr2 25770258 25770259 1 OsKitaake02g254700
Deletion Chr11 29598358 29598360 2
Deletion Chr3 29981522 29981524 2
Deletion Chr1 38409851 38409853 2
Deletion Chr1 39035409 39035427 18

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3362367 3362369 1
Insertion Chr11 11876774 11876777 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 37662486 37811667 2
Inversion Chr1 37662488 37685217 OsKitaake01g401900

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 10976087 Chr2 32961754 2
Translocation Chr11 10977366 Chr2 32961746 2
Translocation Chr11 10977370 Chr3 11217541 OsKitaake11g106100
Translocation Chr11 10977627 Chr3 11217521

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8117290	G-T	Homo	INTERGENIC
SBS	Chr1	17763189	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g180700
SBS	Chr1	25304092	G-A	Hetero	INTERGENIC
SBS	Chr1	28736583	A-T	Hetero	INTERGENIC
SBS	Chr1	37794529	C-T	Homo	INTERGENIC
SBS	Chr1	38008904	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	39534550	G-A	Hetero	INTERGENIC
SBS	Chr1	41410829	G-A	Homo	INTERGENIC
SBS	Chr2	8799517	A-T	Hetero	UTR_5_PRIME
SBS	Chr2	11263711	A-T	Homo	INTERGENIC
SBS	Chr2	15003937	C-T	Hetero	INTERGENIC
SBS	Chr2	16805291	T-A	Hetero	INTERGENIC
SBS	Chr2	25260153	C-T	Homo	INTERGENIC
SBS	Chr3	2253845	T-C	Hetero	INTERGENIC
SBS	Chr3	33770955	G-T	Hetero	INTERGENIC
SBS	Chr4	28941608	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g217800
SBS	Chr5	4891696	C-A	Hetero	UTR_3_PRIME
SBS	Chr5	16923520	T-A	Homo	INTERGENIC
SBS	Chr5	28783808	C-A	Hetero	INTERGENIC
SBS	Chr5	28783811	T-C	Hetero	INTERGENIC
SBS	Chr6	3131500	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	14297807	C-T	Homo	INTERGENIC
SBS	Chr6	20453454	G-A	Homo	INTERGENIC
SBS	Chr7	6533843	T-G	Homo	INTERGENIC
SBS	Chr8	5190034	G-T	Homo	INTRON
SBS	Chr8	5190035	C-T	Homo	INTRON
SBS	Chr8	29000519	T-A	Hetero	INTERGENIC
SBS	Chr9	9523397	G-A	Hetero	INTERGENIC
SBS	Chr9	11218157	C-A	Hetero	INTERGENIC
SBS	Chr9	14287742	C-T	Hetero	INTRON
SBS	Chr9	14972794	G-T	Hetero	INTERGENIC
SBS	Chr9	17393708	A-G	Hetero	INTERGENIC
SBS	Chr10	1198020	C-A	Hetero	START_LOST	OsKitaake10g009000
SBS	Chr10	23182409	G-A	Hetero	INTERGENIC
SBS	Chr11	11502627	G-A	Homo	INTERGENIC
SBS	Chr11	28015380	C-T	Homo	INTERGENIC
SBS	Chr12	771383	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	2855802	C-T	Hetero	INTERGENIC
SBS	Chr12	11193945	G-A	Hetero	INTERGENIC
SBS	Chr12	20622116	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	584215	584216	1
Deletion	Chr5	740986	740988	2
Deletion	Chr3	2316043	2316046	3
Deletion	Chr1	3496749	3496757	8
Deletion	Chr3	3516323	3516324	1
Deletion	Chr2	7824647	7824649	2
Deletion	Chr4	8221637	8221986	349	OsKitaake04g042800
Deletion	Chr10	8706655	8706656	1
Deletion	Chr1	9218394	9218395	1
Deletion	Chr2	11185001	11293000	107999	13
Deletion	Chr3	12850134	12850138	4
Deletion	Chr11	14130519	14130520	1
Deletion	Chr2	20550466	20550788	322
Deletion	Chr5	22861873	22861875	2
Deletion	Chr2	23451311	23451315	4
Deletion	Chr2	25770258	25770259	1	OsKitaake02g254700
Deletion	Chr11	29598358	29598360	2
Deletion	Chr3	29981522	29981524	2
Deletion	Chr1	38409851	38409853	2
Deletion	Chr1	39035409	39035427	18

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	37662486	37811667	2
Inversion	Chr1	37662488	37685217	OsKitaake01g401900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes