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Mutant Information

Mutant Name	FN1385-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1385-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5153955 A-G Homo INTRON
SBS Chr1 8822167 G-T Hetero INTERGENIC
SBS Chr1 8822169 A-T Hetero INTERGENIC
SBS Chr1 18442038 C-T Hetero INTERGENIC
SBS Chr1 38921585 G-T Hetero INTERGENIC
SBS Chr1 39744365 A-G Homo INTERGENIC
SBS Chr2 6962024 T-A Homo INTERGENIC
SBS Chr2 15069703 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g157800
SBS Chr2 18643339 G-A Hetero INTRON
SBS Chr2 18923610 A-T Hetero INTERGENIC
SBS Chr2 19312796 G-A Hetero INTERGENIC
SBS Chr2 29099007 T-A Hetero INTRON
SBS Chr3 11300888 C-G Homo INTRON
SBS Chr3 12861420 T-A Homo INTERGENIC
SBS Chr3 17425360 T-G Homo UTR_5_PRIME
SBS Chr3 19142400 A-G Hetero INTERGENIC
SBS Chr3 34112665 G-A Hetero INTERGENIC
SBS Chr4 9646869 G-T Hetero INTERGENIC
SBS Chr4 11615844 A-G Hetero INTERGENIC
SBS Chr4 15460597 T-A Hetero INTERGENIC
SBS Chr4 23017924 G-T Hetero INTERGENIC
SBS Chr4 26341670 G-A Hetero INTERGENIC
SBS Chr5 8170553 A-C Hetero INTERGENIC
SBS Chr5 14498101 G-A Homo UTR_3_PRIME
SBS Chr6 14951490 C-T Homo INTERGENIC
SBS Chr6 20742980 T-A Hetero INTERGENIC
SBS Chr6 20742981 T-A Hetero INTERGENIC
SBS Chr6 23627126 A-T Hetero INTRON
SBS Chr7 10400361 C-T Homo INTERGENIC
SBS Chr7 16793307 G-A Hetero INTERGENIC
SBS Chr7 23879361 A-G Hetero INTERGENIC
SBS Chr7 25801060 A-T Hetero INTERGENIC
SBS Chr9 911638 T-C Hetero INTERGENIC
SBS Chr9 8851245 G-C Homo INTERGENIC
SBS Chr9 10237282 C-T Homo INTERGENIC
SBS Chr10 27252 G-A Hetero INTERGENIC
SBS Chr10 10745600 G-A Hetero INTERGENIC
SBS Chr11 10988746 G-A Homo INTERGENIC
SBS Chr11 14944794 T-A Hetero INTERGENIC
SBS Chr11 16452201 C-A Homo NON_SYNONYMOUS_CODING OsKitaake11g130600
SBS Chr12 1438907 T-A Hetero INTERGENIC
SBS Chr12 7520637 A-G Hetero INTRON
SBS Chr12 11038614 G-T Hetero INTERGENIC
SBS Chr12 17827987 A-T Hetero INTERGENIC
SBS Chr12 25106448 T-A Hetero INTERGENIC
SBS Chr12 25725668 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2962907 2962934 27
Deletion Chr1 5129710 5129718 8 OsKitaake01g067500
Deletion Chr9 5737763 5737765 2
Deletion Chr4 6358710 6358715 5
Deletion Chr5 6477201 6477214 13
Deletion Chr10 6739361 6739376 15
Deletion Chr8 6739526 6739612 86
Deletion Chr12 7247976 7247983 7
Deletion Chr9 9171315 9171322 7 OsKitaake09g054500
Deletion Chr9 19219133 19219135 2 OsKitaake09g154800
Deletion Chr3 20337876 20337877 1
Deletion Chr4 31908644 31908645 1
Deletion Chr1 37693220 37693221 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25610951 25610954 2
Insertion Chr7 8686563 8686565 1
Insertion Chr7 28652107 28652110 2
Insertion Chr10 21013182 21013185 2
Insertion Chr12 11211139 11211141 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 2128539 2796695 OsKitaake08g025100
Inversion Chr8 2128542 2796775 OsKitaake08g025100
Inversion Chr9 10246805 10591472
Inversion Chr9 10591461 10780305

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 367622 Chr3 1951536 OsKitaake03g027900
Translocation Chr5 367720 Chr3 1952087
Translocation Chr8 2128534 Chr3 20276817 OsKitaake08g025100
Translocation Chr8 2796384 Chr3 20276726
Translocation Chr10 8659031 Chr1 17293163 OsKitaake10g053166

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5153955	A-G	Homo	INTRON
SBS	Chr1	8822167	G-T	Hetero	INTERGENIC
SBS	Chr1	8822169	A-T	Hetero	INTERGENIC
SBS	Chr1	18442038	C-T	Hetero	INTERGENIC
SBS	Chr1	38921585	G-T	Hetero	INTERGENIC
SBS	Chr1	39744365	A-G	Homo	INTERGENIC
SBS	Chr2	6962024	T-A	Homo	INTERGENIC
SBS	Chr2	15069703	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g157800
SBS	Chr2	18643339	G-A	Hetero	INTRON
SBS	Chr2	18923610	A-T	Hetero	INTERGENIC
SBS	Chr2	19312796	G-A	Hetero	INTERGENIC
SBS	Chr2	29099007	T-A	Hetero	INTRON
SBS	Chr3	11300888	C-G	Homo	INTRON
SBS	Chr3	12861420	T-A	Homo	INTERGENIC
SBS	Chr3	17425360	T-G	Homo	UTR_5_PRIME
SBS	Chr3	19142400	A-G	Hetero	INTERGENIC
SBS	Chr3	34112665	G-A	Hetero	INTERGENIC
SBS	Chr4	9646869	G-T	Hetero	INTERGENIC
SBS	Chr4	11615844	A-G	Hetero	INTERGENIC
SBS	Chr4	15460597	T-A	Hetero	INTERGENIC
SBS	Chr4	23017924	G-T	Hetero	INTERGENIC
SBS	Chr4	26341670	G-A	Hetero	INTERGENIC
SBS	Chr5	8170553	A-C	Hetero	INTERGENIC
SBS	Chr5	14498101	G-A	Homo	UTR_3_PRIME
SBS	Chr6	14951490	C-T	Homo	INTERGENIC
SBS	Chr6	20742980	T-A	Hetero	INTERGENIC
SBS	Chr6	20742981	T-A	Hetero	INTERGENIC
SBS	Chr6	23627126	A-T	Hetero	INTRON
SBS	Chr7	10400361	C-T	Homo	INTERGENIC
SBS	Chr7	16793307	G-A	Hetero	INTERGENIC
SBS	Chr7	23879361	A-G	Hetero	INTERGENIC
SBS	Chr7	25801060	A-T	Hetero	INTERGENIC
SBS	Chr9	911638	T-C	Hetero	INTERGENIC
SBS	Chr9	8851245	G-C	Homo	INTERGENIC
SBS	Chr9	10237282	C-T	Homo	INTERGENIC
SBS	Chr10	27252	G-A	Hetero	INTERGENIC
SBS	Chr10	10745600	G-A	Hetero	INTERGENIC
SBS	Chr11	10988746	G-A	Homo	INTERGENIC
SBS	Chr11	14944794	T-A	Hetero	INTERGENIC
SBS	Chr11	16452201	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g130600
SBS	Chr12	1438907	T-A	Hetero	INTERGENIC
SBS	Chr12	7520637	A-G	Hetero	INTRON
SBS	Chr12	11038614	G-T	Hetero	INTERGENIC
SBS	Chr12	17827987	A-T	Hetero	INTERGENIC
SBS	Chr12	25106448	T-A	Hetero	INTERGENIC
SBS	Chr12	25725668	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2962907	2962934	27
Deletion	Chr1	5129710	5129718	8	OsKitaake01g067500
Deletion	Chr9	5737763	5737765	2
Deletion	Chr4	6358710	6358715	5
Deletion	Chr5	6477201	6477214	13
Deletion	Chr10	6739361	6739376	15
Deletion	Chr8	6739526	6739612	86
Deletion	Chr12	7247976	7247983	7
Deletion	Chr9	9171315	9171322	7	OsKitaake09g054500
Deletion	Chr9	19219133	19219135	2	OsKitaake09g154800
Deletion	Chr3	20337876	20337877	1
Deletion	Chr4	31908644	31908645	1
Deletion	Chr1	37693220	37693221	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2128539	2796695	OsKitaake08g025100
Inversion	Chr8	2128542	2796775	OsKitaake08g025100
Inversion	Chr9	10246805	10591472
Inversion	Chr9	10591461	10780305

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes