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Mutant Information

Mutant Name	FN1405-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1405-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12167804 C-G Hetero INTERGENIC
SBS Chr1 17813826 A-C Hetero INTERGENIC
SBS Chr1 19459119 G-A Hetero INTERGENIC
SBS Chr1 21980311 G-A Homo INTERGENIC
SBS Chr2 5975875 G-A Hetero INTERGENIC
SBS Chr2 7931957 G-A Hetero INTERGENIC
SBS Chr2 7931958 C-A Hetero INTERGENIC
SBS Chr2 16831036 G-A Hetero INTERGENIC
SBS Chr3 6099459 A-T Homo INTRON
SBS Chr4 30794980 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g238000
SBS Chr5 26877274 T-A Hetero INTERGENIC
SBS Chr6 3409978 T-C Hetero INTERGENIC
SBS Chr6 9649588 G-C Hetero INTERGENIC
SBS Chr6 23928427 C-T Hetero INTERGENIC
SBS Chr6 27626549 C-T Hetero INTERGENIC
SBS Chr8 5184152 G-A Homo SYNONYMOUS_CODING
SBS Chr8 27325963 C-T Hetero INTERGENIC
SBS Chr9 2974186 C-T Hetero INTERGENIC
SBS Chr9 12596433 T-G Homo NON_SYNONYMOUS_CODING OsKitaake09g083100
SBS Chr9 16023941 C-T Homo INTERGENIC
SBS Chr10 4757458 T-A Hetero INTERGENIC
SBS Chr10 8786303 C-T Homo INTERGENIC
SBS Chr10 23299675 G-A Homo INTERGENIC
SBS Chr11 8992207 T-C Homo INTERGENIC
SBS Chr11 18441004 G-T Homo INTERGENIC
SBS Chr11 21253298 G-T Hetero INTERGENIC
SBS Chr11 29324588 T-C Hetero INTERGENIC
SBS Chr12 2472030 A-C Hetero INTERGENIC
SBS Chr12 17040303 C-T Hetero INTERGENIC
SBS Chr12 18555020 G-T Homo INTERGENIC
SBS Chr12 18555021 A-T Homo INTERGENIC
SBS Chr12 23409257 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 8001 68000 59999 7
Deletion Chr2 451033 451036 3
Deletion Chr8 703709 703728 19
Deletion Chr9 2855001 2900000 44999
Deletion Chr7 13877980 13877982 2
Deletion Chr9 17100506 17100514 8
Deletion Chr1 17242104 17242106 2
Deletion Chr1 17257788 17257954 166
Deletion Chr11 17338196 17338207 11
Deletion Chr4 18474377 18474379 2
Deletion Chr8 19732504 19732509 5
Deletion Chr1 26347978 26347983 5
Deletion Chr11 28182001 28281000 98999 9
Deletion Chr6 30440001 30451000 10999 2
Deletion Chr4 36481388 36481390 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8660438 8660441 2
Insertion Chr6 11899359 11899362 2
Insertion Chr8 6758453 6758456 2
Insertion Chr12 1093514 1093517 2
Insertion Chr3 20042400 20042402 1
Insertion Chr9 2754476 2754478 1

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 165472 Chr4 33080728 OsKitaake04g268500
Translocation Chr9 10716387 Chr4 33081058 2
Translocation Chr9 10718712 Chr4 33080710 OsKitaake04g268500
Translocation Chr8 13872646 Chr2 4932299 OsKitaake02g068500
Translocation Chr8 13872902 Chr2 4932264 OsKitaake02g068500
Translocation Chr8 14120724 Chr4 33081052 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12167804	C-G	Hetero	INTERGENIC
SBS	Chr1	17813826	A-C	Hetero	INTERGENIC
SBS	Chr1	19459119	G-A	Hetero	INTERGENIC
SBS	Chr1	21980311	G-A	Homo	INTERGENIC
SBS	Chr2	5975875	G-A	Hetero	INTERGENIC
SBS	Chr2	7931957	G-A	Hetero	INTERGENIC
SBS	Chr2	7931958	C-A	Hetero	INTERGENIC
SBS	Chr2	16831036	G-A	Hetero	INTERGENIC
SBS	Chr3	6099459	A-T	Homo	INTRON
SBS	Chr4	30794980	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g238000
SBS	Chr5	26877274	T-A	Hetero	INTERGENIC
SBS	Chr6	3409978	T-C	Hetero	INTERGENIC
SBS	Chr6	9649588	G-C	Hetero	INTERGENIC
SBS	Chr6	23928427	C-T	Hetero	INTERGENIC
SBS	Chr6	27626549	C-T	Hetero	INTERGENIC
SBS	Chr8	5184152	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr8	27325963	C-T	Hetero	INTERGENIC
SBS	Chr9	2974186	C-T	Hetero	INTERGENIC
SBS	Chr9	12596433	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g083100
SBS	Chr9	16023941	C-T	Homo	INTERGENIC
SBS	Chr10	4757458	T-A	Hetero	INTERGENIC
SBS	Chr10	8786303	C-T	Homo	INTERGENIC
SBS	Chr10	23299675	G-A	Homo	INTERGENIC
SBS	Chr11	8992207	T-C	Homo	INTERGENIC
SBS	Chr11	18441004	G-T	Homo	INTERGENIC
SBS	Chr11	21253298	G-T	Hetero	INTERGENIC
SBS	Chr11	29324588	T-C	Hetero	INTERGENIC
SBS	Chr12	2472030	A-C	Hetero	INTERGENIC
SBS	Chr12	17040303	C-T	Hetero	INTERGENIC
SBS	Chr12	18555020	G-T	Homo	INTERGENIC
SBS	Chr12	18555021	A-T	Homo	INTERGENIC
SBS	Chr12	23409257	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	8001	68000	59999	7
Deletion	Chr2	451033	451036	3
Deletion	Chr8	703709	703728	19
Deletion	Chr9	2855001	2900000	44999
Deletion	Chr7	13877980	13877982	2
Deletion	Chr9	17100506	17100514	8
Deletion	Chr1	17242104	17242106	2
Deletion	Chr1	17257788	17257954	166
Deletion	Chr11	17338196	17338207	11
Deletion	Chr4	18474377	18474379	2
Deletion	Chr8	19732504	19732509	5
Deletion	Chr1	26347978	26347983	5
Deletion	Chr11	28182001	28281000	98999	9
Deletion	Chr6	30440001	30451000	10999	2
Deletion	Chr4	36481388	36481390	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	165472	Chr4	33080728	OsKitaake04g268500
Translocation	Chr9	10716387	Chr4	33081058	2
Translocation	Chr9	10718712	Chr4	33080710	OsKitaake04g268500
Translocation	Chr8	13872646	Chr2	4932299	OsKitaake02g068500
Translocation	Chr8	13872902	Chr2	4932264	OsKitaake02g068500
Translocation	Chr8	14120724	Chr4	33081052	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes