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Mutant Information

Mutant Name	FN1407-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1407-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32876461 C-G Hetero INTERGENIC
SBS Chr2 6601649 A-G Hetero INTERGENIC
SBS Chr2 6785863 C-T Homo INTERGENIC
SBS Chr2 36356354 A-T Hetero INTERGENIC
SBS Chr3 33316517 T-A Homo NON_SYNONYMOUS_CODING OsKitaake03g355900
SBS Chr4 6847021 T-C Homo INTERGENIC
SBS Chr4 7930457 C-T Homo INTERGENIC
SBS Chr4 13768181 G-T Homo INTERGENIC
SBS Chr4 14132589 T-C Homo INTERGENIC
SBS Chr4 16978398 C-T Hetero INTERGENIC
SBS Chr4 20545793 C-T Homo INTERGENIC
SBS Chr5 14493360 G-A Homo INTERGENIC
SBS Chr5 15703483 G-C Homo INTERGENIC
SBS Chr5 15703497 C-T Homo INTERGENIC
SBS Chr5 22652774 C-T Hetero INTERGENIC
SBS Chr5 25944145 C-T Homo INTERGENIC
SBS Chr6 5975045 C-T Hetero UTR_3_PRIME
SBS Chr7 6816886 T-G Hetero INTERGENIC
SBS Chr7 13429339 T-A Hetero INTERGENIC
SBS Chr8 18001871 T-G Hetero UTR_3_PRIME
SBS Chr9 4089512 C-T Homo INTERGENIC
SBS Chr9 16754847 C-T Hetero INTERGENIC
SBS Chr10 8222953 G-A Hetero INTERGENIC
SBS Chr10 13309426 T-C Hetero INTERGENIC
SBS Chr11 27234724 C-T Hetero INTERGENIC
SBS Chr12 8141916 A-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1754433 1754435 2
Deletion Chr1 4880919 4881280 361
Deletion Chr6 5428128 5428134 6
Deletion Chr11 5902001 5915000 12999 2
Deletion Chr3 7986338 7986345 7
Deletion Chr2 9744407 9744408 1 OsKitaake02g119000
Deletion Chr11 9903728 9903729 1
Deletion Chr2 10321828 10321830 2
Deletion Chr10 10872699 10872824 125
Deletion Chr12 16448300 16448301 1
Deletion Chr2 16915255 16915259 4
Deletion Chr12 23034836 23034842 6
Deletion Chr3 32886899 32886901 2
Deletion Chr3 37255203 37255209 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4607924 4607927 2
Insertion Chr3 8518352 8518355 2
Insertion Chr3 34530370 34530375 4
Insertion Chr9 2754476 2754478 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 19190364 Chr3 21461128 OsKitaake06g173400
Translocation Chr6 19190376 Chr3 21462571 OsKitaake06g173400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32876461	C-G	Hetero	INTERGENIC
SBS	Chr2	6601649	A-G	Hetero	INTERGENIC
SBS	Chr2	6785863	C-T	Homo	INTERGENIC
SBS	Chr2	36356354	A-T	Hetero	INTERGENIC
SBS	Chr3	33316517	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g355900
SBS	Chr4	6847021	T-C	Homo	INTERGENIC
SBS	Chr4	7930457	C-T	Homo	INTERGENIC
SBS	Chr4	13768181	G-T	Homo	INTERGENIC
SBS	Chr4	14132589	T-C	Homo	INTERGENIC
SBS	Chr4	16978398	C-T	Hetero	INTERGENIC
SBS	Chr4	20545793	C-T	Homo	INTERGENIC
SBS	Chr5	14493360	G-A	Homo	INTERGENIC
SBS	Chr5	15703483	G-C	Homo	INTERGENIC
SBS	Chr5	15703497	C-T	Homo	INTERGENIC
SBS	Chr5	22652774	C-T	Hetero	INTERGENIC
SBS	Chr5	25944145	C-T	Homo	INTERGENIC
SBS	Chr6	5975045	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	6816886	T-G	Hetero	INTERGENIC
SBS	Chr7	13429339	T-A	Hetero	INTERGENIC
SBS	Chr8	18001871	T-G	Hetero	UTR_3_PRIME
SBS	Chr9	4089512	C-T	Homo	INTERGENIC
SBS	Chr9	16754847	C-T	Hetero	INTERGENIC
SBS	Chr10	8222953	G-A	Hetero	INTERGENIC
SBS	Chr10	13309426	T-C	Hetero	INTERGENIC
SBS	Chr11	27234724	C-T	Hetero	INTERGENIC
SBS	Chr12	8141916	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1754433	1754435	2
Deletion	Chr1	4880919	4881280	361
Deletion	Chr6	5428128	5428134	6
Deletion	Chr11	5902001	5915000	12999	2
Deletion	Chr3	7986338	7986345	7
Deletion	Chr2	9744407	9744408	1	OsKitaake02g119000
Deletion	Chr11	9903728	9903729	1
Deletion	Chr2	10321828	10321830	2
Deletion	Chr10	10872699	10872824	125
Deletion	Chr12	16448300	16448301	1
Deletion	Chr2	16915255	16915259	4
Deletion	Chr12	23034836	23034842	6
Deletion	Chr3	32886899	32886901	2
Deletion	Chr3	37255203	37255209	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	19190364	Chr3	21461128	OsKitaake06g173400
Translocation	Chr6	19190376	Chr3	21462571	OsKitaake06g173400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes