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Mutant Information

Mutant Name	FN1409-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1409-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 939154 G-T Hetero INTERGENIC
SBS Chr1 9915845 C-A Hetero INTERGENIC
SBS Chr1 16305089 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 42580531 T-C Hetero INTERGENIC
SBS Chr3 3761856 T-A Hetero INTRON
SBS Chr3 3767877 G-A Hetero INTRON
SBS Chr3 33132803 C-T Hetero INTERGENIC
SBS Chr4 22130194 C-T Homo INTERGENIC
SBS Chr4 35994176 T-G Hetero UTR_3_PRIME
SBS Chr5 429213 C-T Hetero INTERGENIC
SBS Chr5 4069468 T-A Hetero INTERGENIC
SBS Chr5 11395035 T-A Hetero INTERGENIC
SBS Chr6 4417102 T-A Hetero STOP_LOST OsKitaake06g060600
SBS Chr6 9908380 C-T Hetero INTERGENIC
SBS Chr6 11296447 G-A Homo INTERGENIC
SBS Chr6 14379135 G-A Homo INTERGENIC
SBS Chr6 16394920 C-T Hetero INTERGENIC
SBS Chr6 19831874 G-A Homo INTERGENIC
SBS Chr6 24342710 G-A Homo INTERGENIC
SBS Chr7 2432832 G-A Hetero INTERGENIC
SBS Chr7 9034544 G-A Hetero INTERGENIC
SBS Chr7 10829693 C-T Hetero INTERGENIC
SBS Chr7 17606114 A-G Hetero INTERGENIC
SBS Chr7 18230405 A-C Hetero SPLICE_SITE_DONOR OsKitaake07g147300
SBS Chr7 19899586 G-A Hetero INTERGENIC
SBS Chr7 19899592 G-A Hetero INTERGENIC
SBS Chr7 28072888 C-T Hetero INTERGENIC
SBS Chr8 15093754 G-A Homo INTERGENIC
SBS Chr8 21749980 C-T Hetero INTERGENIC
SBS Chr9 9754428 G-A Hetero INTRON
SBS Chr9 12513220 G-A Hetero INTERGENIC
SBS Chr9 16152524 A-G Hetero INTERGENIC
SBS Chr10 4704156 A-G Hetero INTERGENIC
SBS Chr10 5577929 C-T Hetero INTERGENIC
SBS Chr10 5577931 A-G Hetero INTERGENIC
SBS Chr10 22102137 G-A Hetero INTRON
SBS Chr11 19720009 C-T Hetero INTERGENIC
SBS Chr12 3956761 G-A Homo INTERGENIC
SBS Chr12 5115553 G-A Hetero INTERGENIC
SBS Chr12 15421244 A-C Hetero INTERGENIC
SBS Chr12 17816511 C-T Hetero INTERGENIC
SBS Chr12 21779264 T-G Homo INTERGENIC

Deletions: 162

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 169001 190000 20999 5
Deletion Chr10 300001 310000 9999 OsKitaake10g002000
Deletion Chr6 413001 426000 12999 2
Deletion Chr5 571001 587000 15999 2
Deletion Chr6 753001 779000 25999 2
Deletion Chr8 918001 936000 17999 OsKitaake08g012200
Deletion Chr3 1083001 1103000 19999 OsKitaake03g016901
Deletion Chr8 1435050 1435054 4 OsKitaake08g017800
Deletion Chr9 1599001 1621000 21999 OsKitaake09g009200
Deletion Chr2 1636001 1650000 13999 2
Deletion Chr11 1659001 1674000 14999 4
Deletion Chr3 1672001 1689000 16999 OsKitaake03g023750
Deletion Chr5 1692001 1704000 11999 3
Deletion Chr5 1969001 1979000 9999 4
Deletion Chr2 2103001 2116000 12999 2
Deletion Chr4 2452001 2468000 15999
Deletion Chr7 2642001 2656000 13999 OsKitaake07g034500
Deletion Chr9 2744768 2744769 1
Deletion Chr11 2872001 2883000 10999 3
Deletion Chr7 3165001 3184000 18999 2
Deletion Chr2 3382001 3395000 12999 OsKitaake02g048900
Deletion Chr5 3400001 3420000 19999 3
Deletion Chr2 3439001 3454000 14999 OsKitaake02g050200
Deletion Chr12 3475875 3475876 1
Deletion Chr10 3487001 3518000 30999 OsKitaake10g026400
Deletion Chr1 3644001 3663000 18999 OsKitaake01g049000
Deletion Chr9 3720001 3733000 12999
Deletion Chr11 3756001 3769000 12999
Deletion Chr7 3942001 3965000 22999 2
Deletion Chr2 4267001 4279000 11999 OsKitaake02g060400
Deletion Chr8 4599001 4613000 13999 OsKitaake08g052000
Deletion Chr4 4880001 4892000 11999 OsKitaake04g022200
Deletion Chr6 4912001 4922000 9999 OsKitaake06g066500
Deletion Chr2 5089001 5108000 18999
Deletion Chr8 5297001 5308000 10999 3
Deletion Chr8 5419001 5445000 25999 4
Deletion Chr10 5689459 5689460 1
Deletion Chr9 5701001 5709000 7999 OsKitaake09g032500
Deletion Chr2 5804001 5820000 15999 OsKitaake02g080100
Deletion Chr5 5930001 5939000 8999
Deletion Chr3 6085001 6109000 23999 2
Deletion Chr2 6209001 6221000 11999 2
Deletion Chr7 6220001 6229000 8999 OsKitaake07g073800
Deletion Chr9 6940001 6954000 13999 OsKitaake09g039700
Deletion Chr12 7146001 7161000 14999 OsKitaake12g080100
Deletion Chr7 7547001 7558000 10999
Deletion Chr11 7855001 7868000 12999 OsKitaake11g087100
Deletion Chr8 7859001 7874000 14999
Deletion Chr5 7964001 7979000 14999 3
Deletion Chr5 8163001 8174000 10999
Deletion Chr5 8281001 8293000 11999 OsKitaake05g080800
Deletion Chr5 8637001 8657000 19999 OsKitaake05g082400
Deletion Chr4 8641001 8659000 17999 2
Deletion Chr9 8749001 8778000 28999 OsKitaake09g051400
Deletion Chr7 8844001 8853000 8999 2
Deletion Chr4 8937001 8949000 11999 OsKitaake04g046100
Deletion Chr11 9465001 9485000 19999 2
Deletion Chr12 10440001 10454000 13999 3
Deletion Chr2 10504001 10532000 27999 3
Deletion Chr12 10837001 10850000 12999 OsKitaake12g100400
Deletion Chr12 10950001 10964000 13999 OsKitaake12g101500
Deletion Chr8 11427001 11494000 66999 3
Deletion Chr12 11688132 11688297 165
Deletion Chr7 12020001 12036000 15999
Deletion Chr7 12021026 12021028 2
Deletion Chr3 12119001 12133000 13999 2
Deletion Chr9 12297001 12312000 14999 OsKitaake09g080400
Deletion Chr4 12318001 12329000 10999 4
Deletion Chr2 12745001 12765000 19999 4
Deletion Chr2 12839001 12850000 10999 OsKitaake02g143900
Deletion Chr5 13070001 13080000 9999 OsKitaake05g101700
Deletion Chr3 13421001 13433000 11999 OsKitaake03g179400
Deletion Chr10 13860001 13881000 20999 2
Deletion Chr9 14137001 14166000 28999 2
Deletion Chr4 14177001 14189000 11999 OsKitaake04g067900
Deletion Chr10 14624001 14630000 5999 2
Deletion Chr9 14989001 15006000 16999
Deletion Chr12 15025001 15036000 10999 OsKitaake12g118500
Deletion Chr5 15429295 15429297 2
Deletion Chr7 15605001 15617000 11999 OsKitaake07g129700
Deletion Chr2 16068001 16098000 29999 OsKitaake02g166300
Deletion Chr2 16308001 16320000 11999 OsKitaake02g167700
Deletion Chr4 16562001 16578000 15999 OsKitaake04g080900
Deletion Chr8 16565001 16578000 12999 OsKitaake08g127300
Deletion Chr1 16662001 16686000 23999 OsKitaake01g177400
Deletion Chr5 16786001 16806000 19999 OsKitaake05g128600
Deletion Chr5 16865001 16877000 11999 OsKitaake05g128800
Deletion Chr9 16963001 16983000 19999 2
Deletion Chr5 17065001 17080000 14999
Deletion Chr4 17407001 17427000 19999 4
Deletion Chr11 17717882 17718008 126
Deletion Chr12 17844001 17855000 10999
Deletion Chr12 18000001 18011000 10999 OsKitaake12g132300
Deletion Chr7 18217001 18231000 13999 2
Deletion Chr11 18657001 18674000 16999 3
Deletion Chr2 18693001 18708000 14999 OsKitaake02g184000
Deletion Chr5 18947001 18956000 8999 OsKitaake05g148200
Deletion Chr5 19090001 19113000 22999 2
Deletion Chr12 19339001 19353000 13999 2
Deletion Chr9 19525001 19539000 13999 3
Deletion Chr9 19577001 19590000 12999 2
Deletion Chr5 19598537 19598538 1
Deletion Chr3 19997001 20012000 14999 OsKitaake03g230101
Deletion Chr1 20147599 20147602 3
Deletion Chr12 20661001 20670000 8999 OsKitaake12g160800
Deletion Chr1 20682001 20703000 20999 2
Deletion Chr6 20695001 20708000 12999 2
Deletion Chr2 20767001 20782000 14999 OsKitaake02g201300
Deletion Chr3 20875001 20895000 19999 2
Deletion Chr3 21188001 21197000 8999 OsKitaake03g234700
Deletion Chr9 21309001 21331000 21999 2
Deletion Chr2 21319001 21331000 11999 OsKitaake02g205600
Deletion Chr6 21344001 21359000 14999
Deletion Chr3 21538513 21538521 8
Deletion Chr1 21552001 21572000 19999
Deletion Chr4 21862001 21875000 12999 4
Deletion Chr9 22341001 22349000 7999 OsKitaake09g202500
Deletion Chr10 22685001 22700000 14999 OsKitaake10g187800
Deletion Chr4 22736001 22755000 18999 7
Deletion Chr12 23125001 23137000 11999 OsKitaake12g184500
Deletion Chr10 23135001 23162000 26999 OsKitaake10g195250
Deletion Chr12 23443001 23462000 18999 2
Deletion Chr10 23692001 23699000 6999 OsKitaake10g203400
Deletion Chr12 23923001 23936000 12999
Deletion Chr3 24057001 24073000 15999 OsKitaake03g257300
Deletion Chr11 24140001 24151000 10999 OsKitaake11g194000
Deletion Chr11 24234001 24245000 10999
Deletion Chr2 24412001 24430000 17999
Deletion Chr12 24480001 24490000 9999 OsKitaake12g197500
Deletion Chr11 24524001 24545000 20999 OsKitaake11g197800
Deletion Chr3 25110001 25133000 22999 2
Deletion Chr11 25113001 25125000 11999 2
Deletion Chr6 25258001 25277000 18999 2
Deletion Chr6 25346393 25346395 2
Deletion Chr3 25729001 25740000 10999 2
Deletion Chr8 25754001 25773000 18999 OsKitaake08g204200
Deletion Chr2 26112001 26125000 12999 2
Deletion Chr11 26583001 26595000 11999 2
Deletion Chr2 26826400 26826411 11
Deletion Chr7 26847001 26864000 16999 OsKitaake07g250200
Deletion Chr1 27544512 27544514 2
Deletion Chr2 27604001 27620000 15999 OsKitaake02g277500
Deletion Chr2 27673001 27687000 13999 OsKitaake02g278000
Deletion Chr2 27693001 27706000 12999 OsKitaake02g278100
Deletion Chr6 27919001 27932000 12999 OsKitaake06g253400
Deletion Chr3 28186001 28206000 19999 2
Deletion Chr3 28584001 28603000 18999 OsKitaake03g296500
Deletion Chr4 28733001 28744000 10999 OsKitaake04g215400
Deletion Chr4 29076001 29098000 21999 4
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr3 31011001 31033000 21999 2
Deletion Chr3 31732001 31747000 14999 OsKitaake03g334600
Deletion Chr2 32159001 32190000 30999 2
Deletion Chr1 33454001 33472000 17999 OsKitaake01g342500
Deletion Chr2 33694001 33704000 9999 OsKitaake02g348500
Deletion Chr2 34130001 34142000 11999 OsKitaake02g354400
Deletion Chr2 34236425 34236427 2
Deletion Chr2 36365001 36378000 12999 OsKitaake02g385300
Deletion Chr3 37706001 37719000 12999 OsKitaake03g423700
Deletion Chr1 41464001 41480000 15999
Deletion Chr1 42304001 42323000 18999 OsKitaake01g466400
Deletion Chr1 44225001 44237000 11999 OsKitaake01g494300

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25244584 25244587 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 2375223 2497138
Inversion Chr5 2434755 2497143 OsKitaake05g027700
Inversion Chr8 10264505 10885032
Inversion Chr8 10264510 10885040
Inversion Chr5 13640700 13642156
Inversion Chr8 16607853 16642921
Inversion Chr8 16607860 16643014

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	939154	G-T	Hetero	INTERGENIC
SBS	Chr1	9915845	C-A	Hetero	INTERGENIC
SBS	Chr1	16305089	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	42580531	T-C	Hetero	INTERGENIC
SBS	Chr3	3761856	T-A	Hetero	INTRON
SBS	Chr3	3767877	G-A	Hetero	INTRON
SBS	Chr3	33132803	C-T	Hetero	INTERGENIC
SBS	Chr4	22130194	C-T	Homo	INTERGENIC
SBS	Chr4	35994176	T-G	Hetero	UTR_3_PRIME
SBS	Chr5	429213	C-T	Hetero	INTERGENIC
SBS	Chr5	4069468	T-A	Hetero	INTERGENIC
SBS	Chr5	11395035	T-A	Hetero	INTERGENIC
SBS	Chr6	4417102	T-A	Hetero	STOP_LOST	OsKitaake06g060600
SBS	Chr6	9908380	C-T	Hetero	INTERGENIC
SBS	Chr6	11296447	G-A	Homo	INTERGENIC
SBS	Chr6	14379135	G-A	Homo	INTERGENIC
SBS	Chr6	16394920	C-T	Hetero	INTERGENIC
SBS	Chr6	19831874	G-A	Homo	INTERGENIC
SBS	Chr6	24342710	G-A	Homo	INTERGENIC
SBS	Chr7	2432832	G-A	Hetero	INTERGENIC
SBS	Chr7	9034544	G-A	Hetero	INTERGENIC
SBS	Chr7	10829693	C-T	Hetero	INTERGENIC
SBS	Chr7	17606114	A-G	Hetero	INTERGENIC
SBS	Chr7	18230405	A-C	Hetero	SPLICE_SITE_DONOR	OsKitaake07g147300
SBS	Chr7	19899586	G-A	Hetero	INTERGENIC
SBS	Chr7	19899592	G-A	Hetero	INTERGENIC
SBS	Chr7	28072888	C-T	Hetero	INTERGENIC
SBS	Chr8	15093754	G-A	Homo	INTERGENIC
SBS	Chr8	21749980	C-T	Hetero	INTERGENIC
SBS	Chr9	9754428	G-A	Hetero	INTRON
SBS	Chr9	12513220	G-A	Hetero	INTERGENIC
SBS	Chr9	16152524	A-G	Hetero	INTERGENIC
SBS	Chr10	4704156	A-G	Hetero	INTERGENIC
SBS	Chr10	5577929	C-T	Hetero	INTERGENIC
SBS	Chr10	5577931	A-G	Hetero	INTERGENIC
SBS	Chr10	22102137	G-A	Hetero	INTRON
SBS	Chr11	19720009	C-T	Hetero	INTERGENIC
SBS	Chr12	3956761	G-A	Homo	INTERGENIC
SBS	Chr12	5115553	G-A	Hetero	INTERGENIC
SBS	Chr12	15421244	A-C	Hetero	INTERGENIC
SBS	Chr12	17816511	C-T	Hetero	INTERGENIC
SBS	Chr12	21779264	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	169001	190000	20999	5
Deletion	Chr10	300001	310000	9999	OsKitaake10g002000
Deletion	Chr6	413001	426000	12999	2
Deletion	Chr5	571001	587000	15999	2
Deletion	Chr6	753001	779000	25999	2
Deletion	Chr8	918001	936000	17999	OsKitaake08g012200
Deletion	Chr3	1083001	1103000	19999	OsKitaake03g016901
Deletion	Chr8	1435050	1435054	4	OsKitaake08g017800
Deletion	Chr9	1599001	1621000	21999	OsKitaake09g009200
Deletion	Chr2	1636001	1650000	13999	2
Deletion	Chr11	1659001	1674000	14999	4
Deletion	Chr3	1672001	1689000	16999	OsKitaake03g023750
Deletion	Chr5	1692001	1704000	11999	3
Deletion	Chr5	1969001	1979000	9999	4
Deletion	Chr2	2103001	2116000	12999	2
Deletion	Chr4	2452001	2468000	15999
Deletion	Chr7	2642001	2656000	13999	OsKitaake07g034500
Deletion	Chr9	2744768	2744769	1
Deletion	Chr11	2872001	2883000	10999	3
Deletion	Chr7	3165001	3184000	18999	2
Deletion	Chr2	3382001	3395000	12999	OsKitaake02g048900
Deletion	Chr5	3400001	3420000	19999	3
Deletion	Chr2	3439001	3454000	14999	OsKitaake02g050200
Deletion	Chr12	3475875	3475876	1
Deletion	Chr10	3487001	3518000	30999	OsKitaake10g026400
Deletion	Chr1	3644001	3663000	18999	OsKitaake01g049000
Deletion	Chr9	3720001	3733000	12999
Deletion	Chr11	3756001	3769000	12999
Deletion	Chr7	3942001	3965000	22999	2
Deletion	Chr2	4267001	4279000	11999	OsKitaake02g060400
Deletion	Chr8	4599001	4613000	13999	OsKitaake08g052000
Deletion	Chr4	4880001	4892000	11999	OsKitaake04g022200
Deletion	Chr6	4912001	4922000	9999	OsKitaake06g066500
Deletion	Chr2	5089001	5108000	18999
Deletion	Chr8	5297001	5308000	10999	3
Deletion	Chr8	5419001	5445000	25999	4
Deletion	Chr10	5689459	5689460	1
Deletion	Chr9	5701001	5709000	7999	OsKitaake09g032500
Deletion	Chr2	5804001	5820000	15999	OsKitaake02g080100
Deletion	Chr5	5930001	5939000	8999
Deletion	Chr3	6085001	6109000	23999	2
Deletion	Chr2	6209001	6221000	11999	2
Deletion	Chr7	6220001	6229000	8999	OsKitaake07g073800
Deletion	Chr9	6940001	6954000	13999	OsKitaake09g039700
Deletion	Chr12	7146001	7161000	14999	OsKitaake12g080100
Deletion	Chr7	7547001	7558000	10999
Deletion	Chr11	7855001	7868000	12999	OsKitaake11g087100
Deletion	Chr8	7859001	7874000	14999
Deletion	Chr5	7964001	7979000	14999	3
Deletion	Chr5	8163001	8174000	10999
Deletion	Chr5	8281001	8293000	11999	OsKitaake05g080800
Deletion	Chr5	8637001	8657000	19999	OsKitaake05g082400
Deletion	Chr4	8641001	8659000	17999	2
Deletion	Chr9	8749001	8778000	28999	OsKitaake09g051400
Deletion	Chr7	8844001	8853000	8999	2
Deletion	Chr4	8937001	8949000	11999	OsKitaake04g046100
Deletion	Chr11	9465001	9485000	19999	2
Deletion	Chr12	10440001	10454000	13999	3
Deletion	Chr2	10504001	10532000	27999	3
Deletion	Chr12	10837001	10850000	12999	OsKitaake12g100400
Deletion	Chr12	10950001	10964000	13999	OsKitaake12g101500
Deletion	Chr8	11427001	11494000	66999	3
Deletion	Chr12	11688132	11688297	165
Deletion	Chr7	12020001	12036000	15999
Deletion	Chr7	12021026	12021028	2
Deletion	Chr3	12119001	12133000	13999	2
Deletion	Chr9	12297001	12312000	14999	OsKitaake09g080400
Deletion	Chr4	12318001	12329000	10999	4
Deletion	Chr2	12745001	12765000	19999	4
Deletion	Chr2	12839001	12850000	10999	OsKitaake02g143900
Deletion	Chr5	13070001	13080000	9999	OsKitaake05g101700
Deletion	Chr3	13421001	13433000	11999	OsKitaake03g179400
Deletion	Chr10	13860001	13881000	20999	2
Deletion	Chr9	14137001	14166000	28999	2
Deletion	Chr4	14177001	14189000	11999	OsKitaake04g067900
Deletion	Chr10	14624001	14630000	5999	2
Deletion	Chr9	14989001	15006000	16999
Deletion	Chr12	15025001	15036000	10999	OsKitaake12g118500
Deletion	Chr5	15429295	15429297	2
Deletion	Chr7	15605001	15617000	11999	OsKitaake07g129700
Deletion	Chr2	16068001	16098000	29999	OsKitaake02g166300
Deletion	Chr2	16308001	16320000	11999	OsKitaake02g167700
Deletion	Chr4	16562001	16578000	15999	OsKitaake04g080900
Deletion	Chr8	16565001	16578000	12999	OsKitaake08g127300
Deletion	Chr1	16662001	16686000	23999	OsKitaake01g177400
Deletion	Chr5	16786001	16806000	19999	OsKitaake05g128600
Deletion	Chr5	16865001	16877000	11999	OsKitaake05g128800
Deletion	Chr9	16963001	16983000	19999	2
Deletion	Chr5	17065001	17080000	14999
Deletion	Chr4	17407001	17427000	19999	4
Deletion	Chr11	17717882	17718008	126
Deletion	Chr12	17844001	17855000	10999
Deletion	Chr12	18000001	18011000	10999	OsKitaake12g132300
Deletion	Chr7	18217001	18231000	13999	2
Deletion	Chr11	18657001	18674000	16999	3
Deletion	Chr2	18693001	18708000	14999	OsKitaake02g184000
Deletion	Chr5	18947001	18956000	8999	OsKitaake05g148200
Deletion	Chr5	19090001	19113000	22999	2
Deletion	Chr12	19339001	19353000	13999	2
Deletion	Chr9	19525001	19539000	13999	3
Deletion	Chr9	19577001	19590000	12999	2
Deletion	Chr5	19598537	19598538	1
Deletion	Chr3	19997001	20012000	14999	OsKitaake03g230101
Deletion	Chr1	20147599	20147602	3
Deletion	Chr12	20661001	20670000	8999	OsKitaake12g160800
Deletion	Chr1	20682001	20703000	20999	2
Deletion	Chr6	20695001	20708000	12999	2
Deletion	Chr2	20767001	20782000	14999	OsKitaake02g201300
Deletion	Chr3	20875001	20895000	19999	2
Deletion	Chr3	21188001	21197000	8999	OsKitaake03g234700
Deletion	Chr9	21309001	21331000	21999	2
Deletion	Chr2	21319001	21331000	11999	OsKitaake02g205600
Deletion	Chr6	21344001	21359000	14999
Deletion	Chr3	21538513	21538521	8
Deletion	Chr1	21552001	21572000	19999
Deletion	Chr4	21862001	21875000	12999	4
Deletion	Chr9	22341001	22349000	7999	OsKitaake09g202500
Deletion	Chr10	22685001	22700000	14999	OsKitaake10g187800
Deletion	Chr4	22736001	22755000	18999	7
Deletion	Chr12	23125001	23137000	11999	OsKitaake12g184500
Deletion	Chr10	23135001	23162000	26999	OsKitaake10g195250
Deletion	Chr12	23443001	23462000	18999	2
Deletion	Chr10	23692001	23699000	6999	OsKitaake10g203400
Deletion	Chr12	23923001	23936000	12999
Deletion	Chr3	24057001	24073000	15999	OsKitaake03g257300
Deletion	Chr11	24140001	24151000	10999	OsKitaake11g194000
Deletion	Chr11	24234001	24245000	10999
Deletion	Chr2	24412001	24430000	17999
Deletion	Chr12	24480001	24490000	9999	OsKitaake12g197500
Deletion	Chr11	24524001	24545000	20999	OsKitaake11g197800
Deletion	Chr3	25110001	25133000	22999	2
Deletion	Chr11	25113001	25125000	11999	2
Deletion	Chr6	25258001	25277000	18999	2
Deletion	Chr6	25346393	25346395	2
Deletion	Chr3	25729001	25740000	10999	2
Deletion	Chr8	25754001	25773000	18999	OsKitaake08g204200
Deletion	Chr2	26112001	26125000	12999	2
Deletion	Chr11	26583001	26595000	11999	2
Deletion	Chr2	26826400	26826411	11
Deletion	Chr7	26847001	26864000	16999	OsKitaake07g250200
Deletion	Chr1	27544512	27544514	2
Deletion	Chr2	27604001	27620000	15999	OsKitaake02g277500
Deletion	Chr2	27673001	27687000	13999	OsKitaake02g278000
Deletion	Chr2	27693001	27706000	12999	OsKitaake02g278100
Deletion	Chr6	27919001	27932000	12999	OsKitaake06g253400
Deletion	Chr3	28186001	28206000	19999	2
Deletion	Chr3	28584001	28603000	18999	OsKitaake03g296500
Deletion	Chr4	28733001	28744000	10999	OsKitaake04g215400
Deletion	Chr4	29076001	29098000	21999	4
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr3	31011001	31033000	21999	2
Deletion	Chr3	31732001	31747000	14999	OsKitaake03g334600
Deletion	Chr2	32159001	32190000	30999	2
Deletion	Chr1	33454001	33472000	17999	OsKitaake01g342500
Deletion	Chr2	33694001	33704000	9999	OsKitaake02g348500
Deletion	Chr2	34130001	34142000	11999	OsKitaake02g354400
Deletion	Chr2	34236425	34236427	2
Deletion	Chr2	36365001	36378000	12999	OsKitaake02g385300
Deletion	Chr3	37706001	37719000	12999	OsKitaake03g423700
Deletion	Chr1	41464001	41480000	15999
Deletion	Chr1	42304001	42323000	18999	OsKitaake01g466400
Deletion	Chr1	44225001	44237000	11999	OsKitaake01g494300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2375223	2497138
Inversion	Chr5	2434755	2497143	OsKitaake05g027700
Inversion	Chr8	10264505	10885032
Inversion	Chr8	10264510	10885040
Inversion	Chr5	13640700	13642156
Inversion	Chr8	16607853	16642921
Inversion	Chr8	16607860	16643014

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes