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Mutant Information

Mutant Name	FN1410-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1410-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7049826 G-A Homo INTRON
SBS Chr1 19133948 T-C Hetero INTERGENIC
SBS Chr1 19391765 G-A Homo INTERGENIC
SBS Chr1 21750328 T-C Homo INTERGENIC
SBS Chr1 29381217 C-G Hetero SYNONYMOUS_CODING
SBS Chr2 9516733 C-A Hetero INTERGENIC
SBS Chr2 24988345 C-G Hetero INTERGENIC
SBS Chr2 32379917 T-C Hetero INTERGENIC
SBS Chr3 4204235 G-A Hetero INTERGENIC
SBS Chr3 7719511 G-A Hetero INTERGENIC
SBS Chr3 11523895 C-T Hetero INTRON
SBS Chr3 24422770 G-T Hetero INTERGENIC
SBS Chr4 1591473 T-A Hetero INTERGENIC
SBS Chr4 7445894 A-T Homo INTERGENIC
SBS Chr4 23917276 G-A Homo INTERGENIC
SBS Chr4 28473064 A-T Hetero UTR_3_PRIME
SBS Chr5 2874827 A-T Hetero INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr6 6029010 C-A Hetero INTRON
SBS Chr6 7921354 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g101133
SBS Chr6 13117709 G-A Hetero INTERGENIC
SBS Chr6 15731220 G-T Hetero INTERGENIC
SBS Chr6 17854981 G-C Hetero INTERGENIC
SBS Chr6 18326161 T-C Hetero INTERGENIC
SBS Chr7 4073819 C-T Homo UTR_3_PRIME
SBS Chr7 4596807 G-A Homo INTERGENIC
SBS Chr7 4801535 A-G Homo INTERGENIC
SBS Chr7 21167305 G-C Hetero INTERGENIC
SBS Chr7 26141751 C-A Hetero INTERGENIC
SBS Chr7 27892277 C-T Hetero INTRON
SBS Chr9 5713043 T-C Hetero INTERGENIC
SBS Chr9 19368338 A-G Hetero INTERGENIC
SBS Chr9 21530107 T-A Hetero INTERGENIC
SBS Chr9 21656970 G-A Hetero INTERGENIC
SBS Chr9 22579736 T-C Hetero INTERGENIC
SBS Chr11 10309207 G-A Hetero INTERGENIC
SBS Chr11 12793831 C-G Hetero INTERGENIC
SBS Chr11 18412870 G-A Homo INTERGENIC
SBS Chr11 26388160 G-C Hetero INTERGENIC
SBS Chr12 11132548 A-G Hetero INTERGENIC
SBS Chr12 23430579 G-A Hetero INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 6779438 6779440 2
Deletion Chr7 8301454 8301456 2
Deletion Chr3 10008491 10008492 1
Deletion Chr12 10256095 10256105 10
Deletion Chr1 11450605 11450606 1
Deletion Chr2 15324216 15324218 2
Deletion Chr10 17094520 17094521 1
Deletion Chr9 20524001 20610000 85999 19
Deletion Chr6 21374833 21374835 2
Deletion Chr1 23253001 23273000 19999 OsKitaake01g222400
Deletion Chr4 26758166 26758167 1
Deletion Chr1 27630046 27630048 2
Deletion Chr11 28401896 28401897 1
Deletion Chr11 28477630 28477636 6
Deletion Chr1 31858738 31858764 26
Deletion Chr2 34064519 34064520 1
Deletion Chr3 35259903 35259905 2
Deletion Chr2 36873399 36873406 7

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4101192 4101195 2
Insertion Chr1 5762376 5762382 5
Insertion Chr2 34289187 34289190 2
Insertion Chr3 25559068 25559072 3 OsKitaake03g270100
Insertion Chr3 37199082 37199084 1
Insertion Chr10 9881998 9882001 2
Insertion Chr8 1784987 1784989 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 4594454 4647435
Inversion Chr7 4594456 4647435
Inversion Chr3 11154859 11877131
Inversion Chr3 11154869 11877139

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 3710254 Chr6 19239167 OsKitaake06g173800
Translocation Chr9 3721186 Chr6 19239187 OsKitaake06g173800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7049826	G-A	Homo	INTRON
SBS	Chr1	19133948	T-C	Hetero	INTERGENIC
SBS	Chr1	19391765	G-A	Homo	INTERGENIC
SBS	Chr1	21750328	T-C	Homo	INTERGENIC
SBS	Chr1	29381217	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	9516733	C-A	Hetero	INTERGENIC
SBS	Chr2	24988345	C-G	Hetero	INTERGENIC
SBS	Chr2	32379917	T-C	Hetero	INTERGENIC
SBS	Chr3	4204235	G-A	Hetero	INTERGENIC
SBS	Chr3	7719511	G-A	Hetero	INTERGENIC
SBS	Chr3	11523895	C-T	Hetero	INTRON
SBS	Chr3	24422770	G-T	Hetero	INTERGENIC
SBS	Chr4	1591473	T-A	Hetero	INTERGENIC
SBS	Chr4	7445894	A-T	Homo	INTERGENIC
SBS	Chr4	23917276	G-A	Homo	INTERGENIC
SBS	Chr4	28473064	A-T	Hetero	UTR_3_PRIME
SBS	Chr5	2874827	A-T	Hetero	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr6	6029010	C-A	Hetero	INTRON
SBS	Chr6	7921354	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g101133
SBS	Chr6	13117709	G-A	Hetero	INTERGENIC
SBS	Chr6	15731220	G-T	Hetero	INTERGENIC
SBS	Chr6	17854981	G-C	Hetero	INTERGENIC
SBS	Chr6	18326161	T-C	Hetero	INTERGENIC
SBS	Chr7	4073819	C-T	Homo	UTR_3_PRIME
SBS	Chr7	4596807	G-A	Homo	INTERGENIC
SBS	Chr7	4801535	A-G	Homo	INTERGENIC
SBS	Chr7	21167305	G-C	Hetero	INTERGENIC
SBS	Chr7	26141751	C-A	Hetero	INTERGENIC
SBS	Chr7	27892277	C-T	Hetero	INTRON
SBS	Chr9	5713043	T-C	Hetero	INTERGENIC
SBS	Chr9	19368338	A-G	Hetero	INTERGENIC
SBS	Chr9	21530107	T-A	Hetero	INTERGENIC
SBS	Chr9	21656970	G-A	Hetero	INTERGENIC
SBS	Chr9	22579736	T-C	Hetero	INTERGENIC
SBS	Chr11	10309207	G-A	Hetero	INTERGENIC
SBS	Chr11	12793831	C-G	Hetero	INTERGENIC
SBS	Chr11	18412870	G-A	Homo	INTERGENIC
SBS	Chr11	26388160	G-C	Hetero	INTERGENIC
SBS	Chr12	11132548	A-G	Hetero	INTERGENIC
SBS	Chr12	23430579	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	6779438	6779440	2
Deletion	Chr7	8301454	8301456	2
Deletion	Chr3	10008491	10008492	1
Deletion	Chr12	10256095	10256105	10
Deletion	Chr1	11450605	11450606	1
Deletion	Chr2	15324216	15324218	2
Deletion	Chr10	17094520	17094521	1
Deletion	Chr9	20524001	20610000	85999	19
Deletion	Chr6	21374833	21374835	2
Deletion	Chr1	23253001	23273000	19999	OsKitaake01g222400
Deletion	Chr4	26758166	26758167	1
Deletion	Chr1	27630046	27630048	2
Deletion	Chr11	28401896	28401897	1
Deletion	Chr11	28477630	28477636	6
Deletion	Chr1	31858738	31858764	26
Deletion	Chr2	34064519	34064520	1
Deletion	Chr3	35259903	35259905	2
Deletion	Chr2	36873399	36873406	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4594454	4647435
Inversion	Chr7	4594456	4647435
Inversion	Chr3	11154859	11877131
Inversion	Chr3	11154869	11877139

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes