Search Kitaake

Mutant Information

Mutant Name	FN1411-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1411-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 33195498 A-G Homo UTR_3_PRIME
SBS Chr3 7355320 T-A Hetero INTERGENIC
SBS Chr3 10577366 A-G Hetero INTERGENIC
SBS Chr3 23320013 G-A Hetero INTRON
SBS Chr3 31591874 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g332800
SBS Chr4 2418906 C-G Hetero INTERGENIC
SBS Chr4 31817152 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 33608263 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g278200
SBS Chr5 9135037 C-T Hetero INTRON
SBS Chr5 15972467 T-A Hetero INTERGENIC
SBS Chr5 21627832 G-A Hetero INTERGENIC
SBS Chr6 8735858 G-C Hetero INTERGENIC
SBS Chr6 20549925 T-A Hetero INTERGENIC
SBS Chr7 1674361 A-T Hetero UTR_3_PRIME
SBS Chr7 8781943 C-T Hetero INTERGENIC
SBS Chr7 27223689 T-C Hetero INTERGENIC
SBS Chr8 9818424 C-A Hetero INTERGENIC
SBS Chr8 22983131 G-A Homo INTERGENIC
SBS Chr8 25323222 C-T Homo INTERGENIC
SBS Chr9 21261335 C-T Homo INTERGENIC
SBS Chr9 21261337 A-C Homo INTERGENIC
SBS Chr10 2866155 G-T Homo INTERGENIC
SBS Chr10 19209910 C-T Hetero INTERGENIC
SBS Chr11 18172678 G-A Hetero INTERGENIC
SBS Chr12 14896572 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1365001 1381000 15999 OsKitaake05g017100
Deletion Chr2 6717105 6717117 12 OsKitaake02g091500
Deletion Chr9 8373919 8373924 5
Deletion Chr7 8464411 8464484 73
Deletion Chr4 9362474 9362476 2
Deletion Chr3 16839738 16839739 1
Deletion Chr8 19054292 19054294 2
Deletion Chr8 24271210 24271212 2
Deletion Chr4 24801936 24801937 1
Deletion Chr5 26066422 26066430 8
Deletion Chr1 26235001 26374000 138999 11
Deletion Chr7 28667955 28667957 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 26810422 26810425 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 16459084 16750725 OsKitaake09g119800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	33195498	A-G	Homo	UTR_3_PRIME
SBS	Chr3	7355320	T-A	Hetero	INTERGENIC
SBS	Chr3	10577366	A-G	Hetero	INTERGENIC
SBS	Chr3	23320013	G-A	Hetero	INTRON
SBS	Chr3	31591874	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g332800
SBS	Chr4	2418906	C-G	Hetero	INTERGENIC
SBS	Chr4	31817152	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	33608263	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g278200
SBS	Chr5	9135037	C-T	Hetero	INTRON
SBS	Chr5	15972467	T-A	Hetero	INTERGENIC
SBS	Chr5	21627832	G-A	Hetero	INTERGENIC
SBS	Chr6	8735858	G-C	Hetero	INTERGENIC
SBS	Chr6	20549925	T-A	Hetero	INTERGENIC
SBS	Chr7	1674361	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	8781943	C-T	Hetero	INTERGENIC
SBS	Chr7	27223689	T-C	Hetero	INTERGENIC
SBS	Chr8	9818424	C-A	Hetero	INTERGENIC
SBS	Chr8	22983131	G-A	Homo	INTERGENIC
SBS	Chr8	25323222	C-T	Homo	INTERGENIC
SBS	Chr9	21261335	C-T	Homo	INTERGENIC
SBS	Chr9	21261337	A-C	Homo	INTERGENIC
SBS	Chr10	2866155	G-T	Homo	INTERGENIC
SBS	Chr10	19209910	C-T	Hetero	INTERGENIC
SBS	Chr11	18172678	G-A	Hetero	INTERGENIC
SBS	Chr12	14896572	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1365001	1381000	15999	OsKitaake05g017100
Deletion	Chr2	6717105	6717117	12	OsKitaake02g091500
Deletion	Chr9	8373919	8373924	5
Deletion	Chr7	8464411	8464484	73
Deletion	Chr4	9362474	9362476	2
Deletion	Chr3	16839738	16839739	1
Deletion	Chr8	19054292	19054294	2
Deletion	Chr8	24271210	24271212	2
Deletion	Chr4	24801936	24801937	1
Deletion	Chr5	26066422	26066430	8
Deletion	Chr1	26235001	26374000	138999	11
Deletion	Chr7	28667955	28667957	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	16459084	16750725	OsKitaake09g119800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes