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Mutant Information

Mutant Name	FN1413-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1413-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18322034 A-G Homo INTERGENIC
SBS Chr1 40784132 G-A Hetero UTR_3_PRIME
SBS Chr2 7463013 G-A Hetero INTERGENIC
SBS Chr3 3039916 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g042700
SBS Chr3 5407929 T-A Homo INTRON
SBS Chr3 11627633 G-A Hetero INTERGENIC
SBS Chr3 14714863 G-A Hetero INTERGENIC
SBS Chr3 21854554 A-G Hetero INTERGENIC
SBS Chr4 3498835 T-G Hetero INTRON
SBS Chr4 19848986 G-A Homo INTERGENIC
SBS Chr5 7351736 G-T Hetero INTERGENIC
SBS Chr5 13980401 T-G Hetero INTERGENIC
SBS Chr5 23395378 G-A Hetero INTERGENIC
SBS Chr6 5227305 T-C Hetero INTERGENIC
SBS Chr6 10356108 T-A Homo INTERGENIC
SBS Chr6 10356109 T-A Homo INTERGENIC
SBS Chr6 20449071 T-G Hetero INTERGENIC
SBS Chr6 23017455 A-G Hetero INTRON
SBS Chr7 17651517 A-G Hetero INTERGENIC
SBS Chr7 25859024 G-A Hetero INTERGENIC
SBS Chr7 25859025 C-A Hetero INTERGENIC
SBS Chr8 3835949 G-A Hetero INTERGENIC
SBS Chr8 8735419 A-T Homo NON_SYNONYMOUS_CODING OsKitaake08g080600
SBS Chr9 11251872 A-C Homo INTERGENIC
SBS Chr9 11837898 G-A Hetero INTERGENIC
SBS Chr10 7707566 G-C Homo INTERGENIC
SBS Chr11 7624368 G-T Hetero INTERGENIC
SBS Chr11 24653055 C-T Hetero INTERGENIC
SBS Chr11 24653056 G-T Hetero INTERGENIC
SBS Chr12 8002714 T-C Homo INTERGENIC
SBS Chr12 9276797 C-T Hetero INTERGENIC
SBS Chr12 11530187 C-T Hetero INTERGENIC
SBS Chr12 16841367 A-T Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1046920 1046923 3
Deletion Chr3 4499896 4499898 2
Deletion Chr8 6465001 6473000 7999
Deletion Chr5 12515860 12515861 1
Deletion Chr5 15447051 15447059 8
Deletion Chr12 16500099 16500105 6
Deletion Chr1 16839047 16839048 1
Deletion Chr4 17722892 17722893 1
Deletion Chr1 18322223 18322228 5
Deletion Chr3 18456064 18456065 1
Deletion Chr8 18566151 18566155 4
Deletion Chr1 21756651 21756653 2
Deletion Chr3 37608104 37608105 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 28689651 28689654 2
Insertion Chr6 12338848 12338851 2
Insertion Chr12 682596 682599 2
Insertion Chr12 1677486 1677489 2
Insertion Chr5 30226856 30226864 7
Insertion Chr6 10794752 10794754 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 5272940 5464578 OsKitaake04g026900
Inversion Chr4 5272945 5464597 OsKitaake04g026900
Inversion Chr10 14570609 15372205
Inversion Chr10 14570612 15372216

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18322034	A-G	Homo	INTERGENIC
SBS	Chr1	40784132	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	7463013	G-A	Hetero	INTERGENIC
SBS	Chr3	3039916	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g042700
SBS	Chr3	5407929	T-A	Homo	INTRON
SBS	Chr3	11627633	G-A	Hetero	INTERGENIC
SBS	Chr3	14714863	G-A	Hetero	INTERGENIC
SBS	Chr3	21854554	A-G	Hetero	INTERGENIC
SBS	Chr4	3498835	T-G	Hetero	INTRON
SBS	Chr4	19848986	G-A	Homo	INTERGENIC
SBS	Chr5	7351736	G-T	Hetero	INTERGENIC
SBS	Chr5	13980401	T-G	Hetero	INTERGENIC
SBS	Chr5	23395378	G-A	Hetero	INTERGENIC
SBS	Chr6	5227305	T-C	Hetero	INTERGENIC
SBS	Chr6	10356108	T-A	Homo	INTERGENIC
SBS	Chr6	10356109	T-A	Homo	INTERGENIC
SBS	Chr6	20449071	T-G	Hetero	INTERGENIC
SBS	Chr6	23017455	A-G	Hetero	INTRON
SBS	Chr7	17651517	A-G	Hetero	INTERGENIC
SBS	Chr7	25859024	G-A	Hetero	INTERGENIC
SBS	Chr7	25859025	C-A	Hetero	INTERGENIC
SBS	Chr8	3835949	G-A	Hetero	INTERGENIC
SBS	Chr8	8735419	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g080600
SBS	Chr9	11251872	A-C	Homo	INTERGENIC
SBS	Chr9	11837898	G-A	Hetero	INTERGENIC
SBS	Chr10	7707566	G-C	Homo	INTERGENIC
SBS	Chr11	7624368	G-T	Hetero	INTERGENIC
SBS	Chr11	24653055	C-T	Hetero	INTERGENIC
SBS	Chr11	24653056	G-T	Hetero	INTERGENIC
SBS	Chr12	8002714	T-C	Homo	INTERGENIC
SBS	Chr12	9276797	C-T	Hetero	INTERGENIC
SBS	Chr12	11530187	C-T	Hetero	INTERGENIC
SBS	Chr12	16841367	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1046920	1046923	3
Deletion	Chr3	4499896	4499898	2
Deletion	Chr8	6465001	6473000	7999
Deletion	Chr5	12515860	12515861	1
Deletion	Chr5	15447051	15447059	8
Deletion	Chr12	16500099	16500105	6
Deletion	Chr1	16839047	16839048	1
Deletion	Chr4	17722892	17722893	1
Deletion	Chr1	18322223	18322228	5
Deletion	Chr3	18456064	18456065	1
Deletion	Chr8	18566151	18566155	4
Deletion	Chr1	21756651	21756653	2
Deletion	Chr3	37608104	37608105	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5272940	5464578	OsKitaake04g026900
Inversion	Chr4	5272945	5464597	OsKitaake04g026900
Inversion	Chr10	14570609	15372205
Inversion	Chr10	14570612	15372216

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes