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Mutant Information

Mutant Name	FN1414-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1414-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13793727 A-C Hetero INTRON
SBS Chr1 15182491 C-T Hetero INTERGENIC
SBS Chr1 34182732 T-A Hetero INTERGENIC
SBS Chr1 40277689 G-C Hetero UTR_3_PRIME
SBS Chr2 3334164 T-C Hetero INTERGENIC
SBS Chr2 10584248 T-C Hetero INTRON
SBS Chr2 20676107 T-A Hetero INTERGENIC
SBS Chr2 22361824 G-T Hetero INTERGENIC
SBS Chr2 22361825 C-T Hetero INTERGENIC
SBS Chr2 35640663 C-T Hetero INTERGENIC
SBS Chr3 4699237 C-T Hetero INTERGENIC
SBS Chr3 27804664 T-C Hetero INTERGENIC
SBS Chr3 30772840 G-A Hetero INTERGENIC
SBS Chr4 24852057 G-T Hetero INTERGENIC
SBS Chr5 475709 G-C Hetero INTERGENIC
SBS Chr5 5039188 T-G Hetero INTERGENIC
SBS Chr5 26470018 T-C Hetero SPLICE_SITE_REGION
SBS Chr6 5425598 C-T Hetero INTERGENIC
SBS Chr6 12100913 T-C Hetero INTERGENIC
SBS Chr6 13751411 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 16657842 A-G Hetero INTERGENIC
SBS Chr6 18791933 A-G Hetero INTRON
SBS Chr6 20097560 T-A Hetero INTERGENIC
SBS Chr7 3625351 G-A Hetero INTERGENIC
SBS Chr7 16182531 A-G Hetero INTERGENIC
SBS Chr7 18924593 T-C Hetero INTERGENIC
SBS Chr7 19037345 C-T Hetero INTERGENIC
SBS Chr7 21735525 C-T Hetero INTERGENIC
SBS Chr7 24779946 A-G Hetero INTERGENIC
SBS Chr8 6441610 T-C Homo INTERGENIC
SBS Chr8 11376912 C-T Hetero INTERGENIC
SBS Chr8 20916136 G-C Hetero INTERGENIC
SBS Chr9 1050056 G-A Hetero INTERGENIC
SBS Chr9 1520814 C-T Hetero INTERGENIC
SBS Chr9 4919146 A-T Hetero SPLICE_SITE_REGION
SBS Chr9 10450273 T-C Hetero INTERGENIC
SBS Chr9 12877146 G-A Hetero INTERGENIC
SBS Chr9 14189602 G-A Hetero INTERGENIC
SBS Chr10 7878163 T-C Hetero INTERGENIC
SBS Chr10 7878167 G-C Hetero INTERGENIC
SBS Chr10 10029917 C-G Hetero INTERGENIC
SBS Chr10 12290370 G-C Hetero INTRON
SBS Chr11 7161598 G-A Hetero INTERGENIC
SBS Chr11 11388724 G-A Hetero INTERGENIC
SBS Chr12 8192030 A-T Hetero INTERGENIC
SBS Chr12 19784186 A-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 5831927 5832153 226
Deletion Chr8 10611157 10611161 4
Deletion Chr11 12699550 12699564 14
Deletion Chr8 13199001 13259000 59999
Deletion Chr12 13809532 13809533 1
Deletion Chr3 20035146 20035300 154
Deletion Chr12 20987240 20987242 2
Deletion Chr11 25685307 25685310 3
Deletion Chr7 27454717 27454718 1
Deletion Chr11 28449198 28449200 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18319526 18319529 2
Insertion Chr10 20239395 20239398 2

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 2078430 2811676
Inversion Chr12 2078438 2811673
Inversion Chr11 22823893 23220219 OsKitaake11g184700
Inversion Chr11 23220094 23220805 OsKitaake11g184700
Inversion Chr7 25694505 26098697
Inversion Chr7 25694531 26098694
Inversion Chr4 26194555 26863234 2
Inversion Chr4 26194565 26863348 2
Inversion Chr8 26953120 27470977 OsKitaake08g218900
Inversion Chr8 26953123 27470979 OsKitaake08g218900

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 4107258 Chr1 10338205
Translocation Chr6 4107266 Chr1 10338627
Translocation Chr9 11638619 Chr1 29472196
Translocation Chr9 11638623 Chr1 29471204
Translocation Chr11 21683434 Chr4 35216016 OsKitaake04g296900
Translocation Chr11 21683440 Chr4 35216709 OsKitaake04g296900
Translocation Chr11 25364993 Chr2 14375765 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13793727	A-C	Hetero	INTRON
SBS	Chr1	15182491	C-T	Hetero	INTERGENIC
SBS	Chr1	34182732	T-A	Hetero	INTERGENIC
SBS	Chr1	40277689	G-C	Hetero	UTR_3_PRIME
SBS	Chr2	3334164	T-C	Hetero	INTERGENIC
SBS	Chr2	10584248	T-C	Hetero	INTRON
SBS	Chr2	20676107	T-A	Hetero	INTERGENIC
SBS	Chr2	22361824	G-T	Hetero	INTERGENIC
SBS	Chr2	22361825	C-T	Hetero	INTERGENIC
SBS	Chr2	35640663	C-T	Hetero	INTERGENIC
SBS	Chr3	4699237	C-T	Hetero	INTERGENIC
SBS	Chr3	27804664	T-C	Hetero	INTERGENIC
SBS	Chr3	30772840	G-A	Hetero	INTERGENIC
SBS	Chr4	24852057	G-T	Hetero	INTERGENIC
SBS	Chr5	475709	G-C	Hetero	INTERGENIC
SBS	Chr5	5039188	T-G	Hetero	INTERGENIC
SBS	Chr5	26470018	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr6	5425598	C-T	Hetero	INTERGENIC
SBS	Chr6	12100913	T-C	Hetero	INTERGENIC
SBS	Chr6	13751411	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	16657842	A-G	Hetero	INTERGENIC
SBS	Chr6	18791933	A-G	Hetero	INTRON
SBS	Chr6	20097560	T-A	Hetero	INTERGENIC
SBS	Chr7	3625351	G-A	Hetero	INTERGENIC
SBS	Chr7	16182531	A-G	Hetero	INTERGENIC
SBS	Chr7	18924593	T-C	Hetero	INTERGENIC
SBS	Chr7	19037345	C-T	Hetero	INTERGENIC
SBS	Chr7	21735525	C-T	Hetero	INTERGENIC
SBS	Chr7	24779946	A-G	Hetero	INTERGENIC
SBS	Chr8	6441610	T-C	Homo	INTERGENIC
SBS	Chr8	11376912	C-T	Hetero	INTERGENIC
SBS	Chr8	20916136	G-C	Hetero	INTERGENIC
SBS	Chr9	1050056	G-A	Hetero	INTERGENIC
SBS	Chr9	1520814	C-T	Hetero	INTERGENIC
SBS	Chr9	4919146	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr9	10450273	T-C	Hetero	INTERGENIC
SBS	Chr9	12877146	G-A	Hetero	INTERGENIC
SBS	Chr9	14189602	G-A	Hetero	INTERGENIC
SBS	Chr10	7878163	T-C	Hetero	INTERGENIC
SBS	Chr10	7878167	G-C	Hetero	INTERGENIC
SBS	Chr10	10029917	C-G	Hetero	INTERGENIC
SBS	Chr10	12290370	G-C	Hetero	INTRON
SBS	Chr11	7161598	G-A	Hetero	INTERGENIC
SBS	Chr11	11388724	G-A	Hetero	INTERGENIC
SBS	Chr12	8192030	A-T	Hetero	INTERGENIC
SBS	Chr12	19784186	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	5831927	5832153	226
Deletion	Chr8	10611157	10611161	4
Deletion	Chr11	12699550	12699564	14
Deletion	Chr8	13199001	13259000	59999
Deletion	Chr12	13809532	13809533	1
Deletion	Chr3	20035146	20035300	154
Deletion	Chr12	20987240	20987242	2
Deletion	Chr11	25685307	25685310	3
Deletion	Chr7	27454717	27454718	1
Deletion	Chr11	28449198	28449200	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2078430	2811676
Inversion	Chr12	2078438	2811673
Inversion	Chr11	22823893	23220219	OsKitaake11g184700
Inversion	Chr11	23220094	23220805	OsKitaake11g184700
Inversion	Chr7	25694505	26098697
Inversion	Chr7	25694531	26098694
Inversion	Chr4	26194555	26863234	2
Inversion	Chr4	26194565	26863348	2
Inversion	Chr8	26953120	27470977	OsKitaake08g218900
Inversion	Chr8	26953123	27470979	OsKitaake08g218900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes