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Mutant Information

Mutant Name	FN1415-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1415-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (13.33% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20756399 C-T Hetero INTERGENIC
SBS Chr2 5390817 A-G Homo INTRON
SBS Chr2 30494528 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g310900
SBS Chr2 33352721 G-T Hetero INTERGENIC
SBS Chr3 12905733 C-T Hetero INTERGENIC
SBS Chr3 24175862 G-A Hetero INTERGENIC
SBS Chr4 2154311 A-T Hetero INTERGENIC
SBS Chr4 4211886 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 10176670 T-A Hetero INTERGENIC
SBS Chr4 11505171 G-A Hetero INTERGENIC
SBS Chr5 28835164 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g271200
SBS Chr6 12925039 C-T Hetero INTERGENIC
SBS Chr6 14615410 G-T Hetero INTERGENIC
SBS Chr7 8349770 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g090850
SBS Chr7 10490917 T-A Hetero INTERGENIC
SBS Chr7 14135890 T-A Hetero INTERGENIC
SBS Chr9 13407013 C-G Hetero INTERGENIC
SBS Chr9 13484492 C-G Homo INTERGENIC
SBS Chr10 1292045 T-C Hetero INTERGENIC
SBS Chr10 15124981 C-T Hetero INTERGENIC
SBS Chr10 17371895 C-A Homo INTERGENIC
SBS Chr11 986245 T-A Hetero INTERGENIC
SBS Chr11 17858131 C-A Hetero INTERGENIC
SBS Chr11 26000868 G-A Hetero INTERGENIC
SBS Chr12 3488347 T-C Hetero INTERGENIC
SBS Chr12 6106340 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g072000
SBS Chr12 7045322 A-G Hetero INTERGENIC
SBS Chr12 7045388 G-C Hetero INTERGENIC
SBS Chr12 14026158 C-T Hetero INTERGENIC
SBS Chr12 17055664 G-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 6437410 6437435 25
Deletion Chr12 12343550 12343551 1
Deletion Chr3 16528056 16528058 2
Deletion Chr5 17827273 17827274 1
Deletion Chr8 18445315 18445326 11
Deletion Chr8 20002833 20002834 1
Deletion Chr1 20098603 20098614 11
Deletion Chr7 21948305 21948308 3
Deletion Chr6 24274969 24274970 1
Deletion Chr2 26012647 26012654 7
Deletion Chr3 33116878 33116882 4
Deletion Chr2 33371830 33371834 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 11682007 11682015 7
Insertion Chr3 22627083 22627086 2
Insertion Chr5 29314935 29314938 2
Insertion Chr12 24386963 24386966 2
Insertion Chr2 31756728 31756730 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 21131167 21838648 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 20531477 Chr2 33212253
Translocation Chr12 20531866 Chr2 33212257 OsKitaake02g341500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20756399	C-T	Hetero	INTERGENIC
SBS	Chr2	5390817	A-G	Homo	INTRON
SBS	Chr2	30494528	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g310900
SBS	Chr2	33352721	G-T	Hetero	INTERGENIC
SBS	Chr3	12905733	C-T	Hetero	INTERGENIC
SBS	Chr3	24175862	G-A	Hetero	INTERGENIC
SBS	Chr4	2154311	A-T	Hetero	INTERGENIC
SBS	Chr4	4211886	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	10176670	T-A	Hetero	INTERGENIC
SBS	Chr4	11505171	G-A	Hetero	INTERGENIC
SBS	Chr5	28835164	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g271200
SBS	Chr6	12925039	C-T	Hetero	INTERGENIC
SBS	Chr6	14615410	G-T	Hetero	INTERGENIC
SBS	Chr7	8349770	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g090850
SBS	Chr7	10490917	T-A	Hetero	INTERGENIC
SBS	Chr7	14135890	T-A	Hetero	INTERGENIC
SBS	Chr9	13407013	C-G	Hetero	INTERGENIC
SBS	Chr9	13484492	C-G	Homo	INTERGENIC
SBS	Chr10	1292045	T-C	Hetero	INTERGENIC
SBS	Chr10	15124981	C-T	Hetero	INTERGENIC
SBS	Chr10	17371895	C-A	Homo	INTERGENIC
SBS	Chr11	986245	T-A	Hetero	INTERGENIC
SBS	Chr11	17858131	C-A	Hetero	INTERGENIC
SBS	Chr11	26000868	G-A	Hetero	INTERGENIC
SBS	Chr12	3488347	T-C	Hetero	INTERGENIC
SBS	Chr12	6106340	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g072000
SBS	Chr12	7045322	A-G	Hetero	INTERGENIC
SBS	Chr12	7045388	G-C	Hetero	INTERGENIC
SBS	Chr12	14026158	C-T	Hetero	INTERGENIC
SBS	Chr12	17055664	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	6437410	6437435	25
Deletion	Chr12	12343550	12343551	1
Deletion	Chr3	16528056	16528058	2
Deletion	Chr5	17827273	17827274	1
Deletion	Chr8	18445315	18445326	11
Deletion	Chr8	20002833	20002834	1
Deletion	Chr1	20098603	20098614	11
Deletion	Chr7	21948305	21948308	3
Deletion	Chr6	24274969	24274970	1
Deletion	Chr2	26012647	26012654	7
Deletion	Chr3	33116878	33116882	4
Deletion	Chr2	33371830	33371834	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	21131167	21838648	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes