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Mutant Information

Mutant Name	FN1419-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1419-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4615730 G-T Hetero INTERGENIC
SBS Chr1 31214223 G-A Hetero INTERGENIC
SBS Chr1 36194838 G-T Hetero INTERGENIC
SBS Chr1 37320544 G-T Hetero INTERGENIC
SBS Chr1 41019656 G-T Hetero INTERGENIC
SBS Chr2 19890780 C-T Homo INTERGENIC
SBS Chr2 28799560 G-T Homo INTERGENIC
SBS Chr3 11323537 C-G Hetero INTERGENIC
SBS Chr3 22344800 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g242800
SBS Chr3 34923954 C-T Hetero INTERGENIC
SBS Chr4 7665844 A-T Hetero INTERGENIC
SBS Chr4 28723524 T-G Homo INTERGENIC
SBS Chr5 81716 G-T Hetero INTERGENIC
SBS Chr5 978790 A-T Hetero INTERGENIC
SBS Chr5 28722550 G-C Homo INTERGENIC
SBS Chr6 3330007 C-T Hetero INTERGENIC
SBS Chr6 12776461 A-T Hetero INTERGENIC
SBS Chr6 23299485 C-T Hetero INTERGENIC
SBS Chr6 24934171 C-A Homo INTERGENIC
SBS Chr7 9868337 G-A Hetero INTERGENIC
SBS Chr8 21293607 G-A Hetero INTERGENIC
SBS Chr8 24808267 C-T Homo INTERGENIC
SBS Chr9 7083341 G-A Homo INTERGENIC
SBS Chr9 9738249 G-T Hetero INTERGENIC
SBS Chr9 16607440 A-T Hetero INTERGENIC
SBS Chr11 14905155 C-G Hetero INTERGENIC
SBS Chr12 1961614 T-C Hetero INTERGENIC
SBS Chr12 2572533 C-T Hetero INTERGENIC
SBS Chr12 3139737 A-G Homo INTERGENIC
SBS Chr12 15088264 G-A Homo INTERGENIC
SBS Chr12 21623975 G-A Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 8345709 8345776 67
Deletion Chr12 17499228 17499239 11
Deletion Chr3 19014349 19014351 2
Deletion Chr7 24190608 24190609 1
Deletion Chr5 27016001 27024000 7999
Deletion Chr2 27096870 27096872 2
Deletion Chr1 32728776 32728781 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 15506440 15506443 2
Insertion Chr9 22300058 22300061 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 28621516 28777816
Inversion Chr6 28621526 28777828

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7054949 Chr2 33929170 2
Translocation Chr12 7055868 Chr2 33929164 2
Translocation Chr10 8658997 Chr1 17293162 OsKitaake10g053166

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4615730	G-T	Hetero	INTERGENIC
SBS	Chr1	31214223	G-A	Hetero	INTERGENIC
SBS	Chr1	36194838	G-T	Hetero	INTERGENIC
SBS	Chr1	37320544	G-T	Hetero	INTERGENIC
SBS	Chr1	41019656	G-T	Hetero	INTERGENIC
SBS	Chr2	19890780	C-T	Homo	INTERGENIC
SBS	Chr2	28799560	G-T	Homo	INTERGENIC
SBS	Chr3	11323537	C-G	Hetero	INTERGENIC
SBS	Chr3	22344800	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g242800
SBS	Chr3	34923954	C-T	Hetero	INTERGENIC
SBS	Chr4	7665844	A-T	Hetero	INTERGENIC
SBS	Chr4	28723524	T-G	Homo	INTERGENIC
SBS	Chr5	81716	G-T	Hetero	INTERGENIC
SBS	Chr5	978790	A-T	Hetero	INTERGENIC
SBS	Chr5	28722550	G-C	Homo	INTERGENIC
SBS	Chr6	3330007	C-T	Hetero	INTERGENIC
SBS	Chr6	12776461	A-T	Hetero	INTERGENIC
SBS	Chr6	23299485	C-T	Hetero	INTERGENIC
SBS	Chr6	24934171	C-A	Homo	INTERGENIC
SBS	Chr7	9868337	G-A	Hetero	INTERGENIC
SBS	Chr8	21293607	G-A	Hetero	INTERGENIC
SBS	Chr8	24808267	C-T	Homo	INTERGENIC
SBS	Chr9	7083341	G-A	Homo	INTERGENIC
SBS	Chr9	9738249	G-T	Hetero	INTERGENIC
SBS	Chr9	16607440	A-T	Hetero	INTERGENIC
SBS	Chr11	14905155	C-G	Hetero	INTERGENIC
SBS	Chr12	1961614	T-C	Hetero	INTERGENIC
SBS	Chr12	2572533	C-T	Hetero	INTERGENIC
SBS	Chr12	3139737	A-G	Homo	INTERGENIC
SBS	Chr12	15088264	G-A	Homo	INTERGENIC
SBS	Chr12	21623975	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	8345709	8345776	67
Deletion	Chr12	17499228	17499239	11
Deletion	Chr3	19014349	19014351	2
Deletion	Chr7	24190608	24190609	1
Deletion	Chr5	27016001	27024000	7999
Deletion	Chr2	27096870	27096872	2
Deletion	Chr1	32728776	32728781	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	28621516	28777816
Inversion	Chr6	28621526	28777828

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes