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Mutant Information

Mutant Name	FN1422-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1422-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14678362 A-C Homo INTERGENIC
SBS Chr1 14928721 T-A Homo INTERGENIC
SBS Chr1 19134220 C-T Homo INTERGENIC
SBS Chr1 32166283 T-C Hetero INTRON
SBS Chr1 32968631 T-G Hetero INTERGENIC
SBS Chr2 1403312 C-A Hetero INTRON
SBS Chr2 9660803 T-C Hetero INTERGENIC
SBS Chr2 15215262 G-A Homo INTERGENIC
SBS Chr2 20294470 C-T Hetero INTERGENIC
SBS Chr2 36406731 G-C Hetero INTRON
SBS Chr3 17109560 G-A Hetero INTERGENIC
SBS Chr4 5892873 T-C Homo INTERGENIC
SBS Chr4 5892875 G-T Homo INTERGENIC
SBS Chr4 10843630 G-A Homo INTERGENIC
SBS Chr4 33052785 G-T Hetero INTERGENIC
SBS Chr4 33855702 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g281800
SBS Chr4 33855703 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g281800
SBS Chr5 3405832 G-A Homo INTERGENIC
SBS Chr5 27406665 G-A Hetero INTERGENIC
SBS Chr5 28771290 C-T Hetero INTERGENIC
SBS Chr6 2622539 G-A Hetero INTERGENIC
SBS Chr6 9369186 G-C Hetero INTERGENIC
SBS Chr6 17779309 G-A Homo INTERGENIC
SBS Chr6 23975457 G-A Homo INTERGENIC
SBS Chr7 20560357 C-T Homo UTR_3_PRIME
SBS Chr8 4939247 G-A Homo INTERGENIC
SBS Chr8 16739476 C-T Hetero INTERGENIC
SBS Chr8 17279045 A-C Hetero INTERGENIC
SBS Chr8 18852877 G-A Homo INTERGENIC
SBS Chr8 28730849 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g246700
SBS Chr9 3500066 T-C Hetero INTRON
SBS Chr10 10907182 G-T Hetero INTRON
SBS Chr10 11348009 C-T Hetero INTERGENIC
SBS Chr11 6287181 C-T Hetero INTERGENIC
SBS Chr12 1003694 C-A Hetero INTRON
SBS Chr12 1506788 C-T Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 6534874 6534882 8
Deletion Chr2 13191204 13191206 2
Deletion Chr12 22228138 22228144 6
Deletion Chr6 26710000 26710014 14
Deletion Chr3 32862306 32862308 2
Deletion Chr1 42875001 42890000 14999

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25967012 25967015 2
Insertion Chr8 11867572 11867575 2
Insertion Chr5 30236466 30236474 7
Insertion Chr12 11707370 11707373 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 24075906 24981188
Inversion Chr4 24079290 24981191

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 3704154 Chr1 18855612 OsKitaake02g053500
Translocation Chr10 17571255 Chr2 3704152 OsKitaake02g053500
Translocation Chr10 17571858 Chr1 18985986 OsKitaake01g190700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14678362	A-C	Homo	INTERGENIC
SBS	Chr1	14928721	T-A	Homo	INTERGENIC
SBS	Chr1	19134220	C-T	Homo	INTERGENIC
SBS	Chr1	32166283	T-C	Hetero	INTRON
SBS	Chr1	32968631	T-G	Hetero	INTERGENIC
SBS	Chr2	1403312	C-A	Hetero	INTRON
SBS	Chr2	9660803	T-C	Hetero	INTERGENIC
SBS	Chr2	15215262	G-A	Homo	INTERGENIC
SBS	Chr2	20294470	C-T	Hetero	INTERGENIC
SBS	Chr2	36406731	G-C	Hetero	INTRON
SBS	Chr3	17109560	G-A	Hetero	INTERGENIC
SBS	Chr4	5892873	T-C	Homo	INTERGENIC
SBS	Chr4	5892875	G-T	Homo	INTERGENIC
SBS	Chr4	10843630	G-A	Homo	INTERGENIC
SBS	Chr4	33052785	G-T	Hetero	INTERGENIC
SBS	Chr4	33855702	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g281800
SBS	Chr4	33855703	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g281800
SBS	Chr5	3405832	G-A	Homo	INTERGENIC
SBS	Chr5	27406665	G-A	Hetero	INTERGENIC
SBS	Chr5	28771290	C-T	Hetero	INTERGENIC
SBS	Chr6	2622539	G-A	Hetero	INTERGENIC
SBS	Chr6	9369186	G-C	Hetero	INTERGENIC
SBS	Chr6	17779309	G-A	Homo	INTERGENIC
SBS	Chr6	23975457	G-A	Homo	INTERGENIC
SBS	Chr7	20560357	C-T	Homo	UTR_3_PRIME
SBS	Chr8	4939247	G-A	Homo	INTERGENIC
SBS	Chr8	16739476	C-T	Hetero	INTERGENIC
SBS	Chr8	17279045	A-C	Hetero	INTERGENIC
SBS	Chr8	18852877	G-A	Homo	INTERGENIC
SBS	Chr8	28730849	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g246700
SBS	Chr9	3500066	T-C	Hetero	INTRON
SBS	Chr10	10907182	G-T	Hetero	INTRON
SBS	Chr10	11348009	C-T	Hetero	INTERGENIC
SBS	Chr11	6287181	C-T	Hetero	INTERGENIC
SBS	Chr12	1003694	C-A	Hetero	INTRON
SBS	Chr12	1506788	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	6534874	6534882	8
Deletion	Chr2	13191204	13191206	2
Deletion	Chr12	22228138	22228144	6
Deletion	Chr6	26710000	26710014	14
Deletion	Chr3	32862306	32862308	2
Deletion	Chr1	42875001	42890000	14999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	24075906	24981188
Inversion	Chr4	24079290	24981191

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes