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Mutant Information

Mutant Name	FN1424-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1424-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2427515 A-G Homo UTR_5_PRIME
SBS Chr1 18188256 A-C Hetero INTERGENIC
SBS Chr1 20419624 T-C Homo INTERGENIC
SBS Chr1 26139716 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g254800
SBS Chr1 40075633 C-T Hetero INTRON
SBS Chr2 10913414 C-T Hetero INTERGENIC
SBS Chr2 11815913 G-A Homo INTRON
SBS Chr2 13616482 G-A Homo INTERGENIC
SBS Chr2 29021070 C-G Hetero UTR_5_PRIME
SBS Chr3 6666346 A-G Homo INTERGENIC
SBS Chr3 7975338 T-C Hetero INTERGENIC
SBS Chr3 22524455 C-A Hetero INTERGENIC
SBS Chr3 28875254 C-T Hetero INTERGENIC
SBS Chr4 16382858 G-A Homo INTERGENIC
SBS Chr4 18101756 C-T Hetero INTERGENIC
SBS Chr4 36477215 A-G Homo NON_SYNONYMOUS_CODING OsKitaake04g317300
SBS Chr5 18247362 A-G Hetero INTERGENIC
SBS Chr5 24151466 G-A Hetero INTERGENIC
SBS Chr6 3344732 C-T Homo UTR_3_PRIME
SBS Chr6 3344733 C-T Homo UTR_3_PRIME
SBS Chr6 23104980 C-A Hetero UTR_3_PRIME
SBS Chr7 9763564 C-T Hetero INTERGENIC
SBS Chr7 11279610 C-T Hetero INTERGENIC
SBS Chr7 17726352 A-T Hetero INTRON
SBS Chr7 25854126 T-C Hetero INTERGENIC
SBS Chr8 778227 T-C Hetero UTR_5_PRIME
SBS Chr8 9794004 C-T Hetero INTERGENIC
SBS Chr9 9550373 C-T Hetero INTERGENIC
SBS Chr9 16187546 G-A Homo INTRON
SBS Chr10 5626355 C-T Hetero INTERGENIC
SBS Chr10 7254771 T-A Hetero INTERGENIC
SBS Chr10 9164010 A-C Hetero INTERGENIC
SBS Chr10 13605218 C-T Hetero INTRON
SBS Chr11 18125240 C-T Hetero INTERGENIC
SBS Chr11 18970073 G-A Homo INTRON
SBS Chr11 24386653 C-T Homo INTERGENIC
SBS Chr11 24854989 A-T Hetero INTERGENIC
SBS Chr11 28635963 T-C Homo INTRON

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2188573 2188594 21
Deletion Chr6 9994359 9994370 11
Deletion Chr2 12131093 12131102 9
Deletion Chr6 12156499 12156500 1
Deletion Chr8 12654637 12654639 2
Deletion Chr11 12679759 12679760 1
Deletion Chr7 12991964 12992031 67
Deletion Chr2 13615026 13615028 2
Deletion Chr10 14644999 14645047 48
Deletion Chr7 15787073 15787075 2
Deletion Chr10 17145668 17145670 2
Deletion Chr3 18361733 18361736 3
Deletion Chr12 18637893 18637903 10
Deletion Chr11 18971961 18971970 9 OsKitaake11g147700
Deletion Chr4 19431001 19448000 16999 OsKitaake04g099601
Deletion Chr12 23914191 23914192 1
Deletion Chr11 26015081 26015098 17
Deletion Chr11 26659983 26660376 393
Deletion Chr4 29316298 29316302 4
Deletion Chr6 30871250 30871276 26

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 7089739 7089742 2
Insertion Chr11 19899294 19899297 2
Insertion Chr1 24396360 24396363 2
Insertion Chr9 10160983 10160987 3

Inversions: 9

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 1225046 1225209 OsKitaake01g014500
Inversion Chr12 6807808 6808175 OsKitaake12g077100
Inversion Chr1 10279258 10517497
Inversion Chr1 10280349 10533475
Inversion Chr1 11717381 11773289
Inversion Chr4 22906561 22907002 OsKitaake04g138300
Inversion Chr7 27652025 27652383 OsKitaake07g258000
Inversion Chr11 28477459 28477813
Inversion Chr11 29522573 29523119 OsKitaake11g243100

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 1995444 Chr1 10280337 OsKitaake02g030300
Translocation Chr2 1995456 Chr1 10279266 OsKitaake02g030300
Translocation Chr6 19838709 Chr1 12875585 OsKitaake01g153800
Translocation Chr6 19838711 Chr1 12875377 OsKitaake01g153800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2427515	A-G	Homo	UTR_5_PRIME
SBS	Chr1	18188256	A-C	Hetero	INTERGENIC
SBS	Chr1	20419624	T-C	Homo	INTERGENIC
SBS	Chr1	26139716	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g254800
SBS	Chr1	40075633	C-T	Hetero	INTRON
SBS	Chr2	10913414	C-T	Hetero	INTERGENIC
SBS	Chr2	11815913	G-A	Homo	INTRON
SBS	Chr2	13616482	G-A	Homo	INTERGENIC
SBS	Chr2	29021070	C-G	Hetero	UTR_5_PRIME
SBS	Chr3	6666346	A-G	Homo	INTERGENIC
SBS	Chr3	7975338	T-C	Hetero	INTERGENIC
SBS	Chr3	22524455	C-A	Hetero	INTERGENIC
SBS	Chr3	28875254	C-T	Hetero	INTERGENIC
SBS	Chr4	16382858	G-A	Homo	INTERGENIC
SBS	Chr4	18101756	C-T	Hetero	INTERGENIC
SBS	Chr4	36477215	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g317300
SBS	Chr5	18247362	A-G	Hetero	INTERGENIC
SBS	Chr5	24151466	G-A	Hetero	INTERGENIC
SBS	Chr6	3344732	C-T	Homo	UTR_3_PRIME
SBS	Chr6	3344733	C-T	Homo	UTR_3_PRIME
SBS	Chr6	23104980	C-A	Hetero	UTR_3_PRIME
SBS	Chr7	9763564	C-T	Hetero	INTERGENIC
SBS	Chr7	11279610	C-T	Hetero	INTERGENIC
SBS	Chr7	17726352	A-T	Hetero	INTRON
SBS	Chr7	25854126	T-C	Hetero	INTERGENIC
SBS	Chr8	778227	T-C	Hetero	UTR_5_PRIME
SBS	Chr8	9794004	C-T	Hetero	INTERGENIC
SBS	Chr9	9550373	C-T	Hetero	INTERGENIC
SBS	Chr9	16187546	G-A	Homo	INTRON
SBS	Chr10	5626355	C-T	Hetero	INTERGENIC
SBS	Chr10	7254771	T-A	Hetero	INTERGENIC
SBS	Chr10	9164010	A-C	Hetero	INTERGENIC
SBS	Chr10	13605218	C-T	Hetero	INTRON
SBS	Chr11	18125240	C-T	Hetero	INTERGENIC
SBS	Chr11	18970073	G-A	Homo	INTRON
SBS	Chr11	24386653	C-T	Homo	INTERGENIC
SBS	Chr11	24854989	A-T	Hetero	INTERGENIC
SBS	Chr11	28635963	T-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2188573	2188594	21
Deletion	Chr6	9994359	9994370	11
Deletion	Chr2	12131093	12131102	9
Deletion	Chr6	12156499	12156500	1
Deletion	Chr8	12654637	12654639	2
Deletion	Chr11	12679759	12679760	1
Deletion	Chr7	12991964	12992031	67
Deletion	Chr2	13615026	13615028	2
Deletion	Chr10	14644999	14645047	48
Deletion	Chr7	15787073	15787075	2
Deletion	Chr10	17145668	17145670	2
Deletion	Chr3	18361733	18361736	3
Deletion	Chr12	18637893	18637903	10
Deletion	Chr11	18971961	18971970	9	OsKitaake11g147700
Deletion	Chr4	19431001	19448000	16999	OsKitaake04g099601
Deletion	Chr12	23914191	23914192	1
Deletion	Chr11	26015081	26015098	17
Deletion	Chr11	26659983	26660376	393
Deletion	Chr4	29316298	29316302	4
Deletion	Chr6	30871250	30871276	26

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1225046	1225209	OsKitaake01g014500
Inversion	Chr12	6807808	6808175	OsKitaake12g077100
Inversion	Chr1	10279258	10517497
Inversion	Chr1	10280349	10533475
Inversion	Chr1	11717381	11773289
Inversion	Chr4	22906561	22907002	OsKitaake04g138300
Inversion	Chr7	27652025	27652383	OsKitaake07g258000
Inversion	Chr11	28477459	28477813
Inversion	Chr11	29522573	29523119	OsKitaake11g243100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes