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Mutant Information

Mutant Name	FN1426-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1426-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 7483261 T-C Hetero INTERGENIC
SBS Chr2 20435095 G-T Hetero INTERGENIC
SBS Chr2 32635547 T-A Homo INTRON
SBS Chr3 2837442 A-G Homo INTERGENIC
SBS Chr3 10277045 G-T Hetero SYNONYMOUS_CODING
SBS Chr3 27716980 C-A Hetero UTR_3_PRIME
SBS Chr4 3186351 G-A Hetero INTERGENIC
SBS Chr4 3186352 G-T Hetero INTERGENIC
SBS Chr4 16688410 C-T Homo INTERGENIC
SBS Chr4 30848438 G-A Hetero INTERGENIC
SBS Chr4 30984234 C-T Hetero INTERGENIC
SBS Chr4 31685069 T-C Hetero UTR_3_PRIME
SBS Chr5 9702654 T-A Hetero INTRON
SBS Chr5 19993116 G-A Hetero INTERGENIC
SBS Chr6 8647979 G-A Hetero INTERGENIC
SBS Chr6 18322765 T-C Hetero INTERGENIC
SBS Chr6 24420366 C-A Hetero INTERGENIC
SBS Chr9 5590672 C-T Hetero INTERGENIC
SBS Chr10 1721596 C-T Homo INTERGENIC
SBS Chr10 10865401 C-A Hetero INTERGENIC
SBS Chr10 17245957 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g117900
SBS Chr10 17245958 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g117900
SBS Chr10 21789508 G-A Hetero INTERGENIC
SBS Chr11 12783230 C-G Hetero INTERGENIC
SBS Chr11 13144308 C-A Hetero INTERGENIC
SBS Chr12 14670399 G-A Hetero INTERGENIC
SBS Chr12 15691803 C-G Homo INTERGENIC
SBS Chr12 17274427 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2948130 2948131 1
Deletion Chr8 5072790 5073158 368
Deletion Chr8 10806835 10806909 74
Deletion Chr8 11055515 11055517 2
Deletion Chr7 15152454 15152455 1 OsKitaake07g126900
Deletion Chr8 17056612 17056614 2
Deletion Chr10 17259078 17259079 1
Deletion Chr1 17312004 17312018 14
Deletion Chr1 17528442 17528444 2
Deletion Chr10 20255741 20255743 2
Deletion Chr2 26164768 26164770 2 OsKitaake02g259350
Deletion Chr2 26539847 26539848 1 OsKitaake02g265300
Deletion Chr1 38814066 38814067 1
Deletion Chr1 43713547 43713549 2 OsKitaake01g486200
Deletion Chr1 44283836 44283844 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 34934393 34934396 2
Insertion Chr10 15385465 15385468 2
Insertion Chr11 8647302 8647305 2
Insertion Chr4 15771735 15771737 1
Insertion Chr5 29287059 29287062 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 493032 Chr6 19216901
Translocation Chr12 493040 Chr6 19215963
Translocation Chr5 18242704 Chr1 6289744
Translocation Chr5 18244870 Chr1 6289745
Translocation Chr12 22859704 Chr7 15059561 OsKitaake12g180800
Translocation Chr12 22859871 Chr7 15058075 OsKitaake12g180800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	7483261	T-C	Hetero	INTERGENIC
SBS	Chr2	20435095	G-T	Hetero	INTERGENIC
SBS	Chr2	32635547	T-A	Homo	INTRON
SBS	Chr3	2837442	A-G	Homo	INTERGENIC
SBS	Chr3	10277045	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	27716980	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	3186351	G-A	Hetero	INTERGENIC
SBS	Chr4	3186352	G-T	Hetero	INTERGENIC
SBS	Chr4	16688410	C-T	Homo	INTERGENIC
SBS	Chr4	30848438	G-A	Hetero	INTERGENIC
SBS	Chr4	30984234	C-T	Hetero	INTERGENIC
SBS	Chr4	31685069	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	9702654	T-A	Hetero	INTRON
SBS	Chr5	19993116	G-A	Hetero	INTERGENIC
SBS	Chr6	8647979	G-A	Hetero	INTERGENIC
SBS	Chr6	18322765	T-C	Hetero	INTERGENIC
SBS	Chr6	24420366	C-A	Hetero	INTERGENIC
SBS	Chr9	5590672	C-T	Hetero	INTERGENIC
SBS	Chr10	1721596	C-T	Homo	INTERGENIC
SBS	Chr10	10865401	C-A	Hetero	INTERGENIC
SBS	Chr10	17245957	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g117900
SBS	Chr10	17245958	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g117900
SBS	Chr10	21789508	G-A	Hetero	INTERGENIC
SBS	Chr11	12783230	C-G	Hetero	INTERGENIC
SBS	Chr11	13144308	C-A	Hetero	INTERGENIC
SBS	Chr12	14670399	G-A	Hetero	INTERGENIC
SBS	Chr12	15691803	C-G	Homo	INTERGENIC
SBS	Chr12	17274427	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2948130	2948131	1
Deletion	Chr8	5072790	5073158	368
Deletion	Chr8	10806835	10806909	74
Deletion	Chr8	11055515	11055517	2
Deletion	Chr7	15152454	15152455	1	OsKitaake07g126900
Deletion	Chr8	17056612	17056614	2
Deletion	Chr10	17259078	17259079	1
Deletion	Chr1	17312004	17312018	14
Deletion	Chr1	17528442	17528444	2
Deletion	Chr10	20255741	20255743	2
Deletion	Chr2	26164768	26164770	2	OsKitaake02g259350
Deletion	Chr2	26539847	26539848	1	OsKitaake02g265300
Deletion	Chr1	38814066	38814067	1
Deletion	Chr1	43713547	43713549	2	OsKitaake01g486200
Deletion	Chr1	44283836	44283844	8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	493032	Chr6	19216901
Translocation	Chr12	493040	Chr6	19215963
Translocation	Chr5	18242704	Chr1	6289744
Translocation	Chr5	18244870	Chr1	6289745
Translocation	Chr12	22859704	Chr7	15059561	OsKitaake12g180800
Translocation	Chr12	22859871	Chr7	15058075	OsKitaake12g180800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes