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Mutant Information

Mutant Name	FN1427-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1427-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1871284 T-C Homo INTRON
SBS Chr1 38649411 T-C Hetero INTERGENIC
SBS Chr1 39210041 G-T Hetero INTERGENIC
SBS Chr2 3689707 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g053300
SBS Chr2 12318272 T-A Homo INTERGENIC
SBS Chr2 15124404 A-T Hetero INTRON
SBS Chr2 32252276 A-T Homo INTERGENIC
SBS Chr3 9333579 G-T Hetero INTERGENIC
SBS Chr3 19323041 C-G Homo INTERGENIC
SBS Chr3 20738909 T-A Homo INTERGENIC
SBS Chr3 28702891 T-A Hetero INTERGENIC
SBS Chr4 311667 C-T Hetero INTERGENIC
SBS Chr4 8891212 A-T Hetero INTERGENIC
SBS Chr4 23893216 A-G Hetero INTERGENIC
SBS Chr4 25875266 G-A Homo INTRON
SBS Chr5 395885 A-G Homo INTERGENIC
SBS Chr5 11019955 G-A Hetero INTERGENIC
SBS Chr6 7038693 T-A Hetero INTERGENIC
SBS Chr6 10559492 G-T Hetero INTERGENIC
SBS Chr6 10559493 A-G Hetero INTERGENIC
SBS Chr6 10559717 T-C Hetero INTERGENIC
SBS Chr6 22151426 A-T Hetero INTERGENIC
SBS Chr6 28262449 C-T Hetero INTERGENIC
SBS Chr7 14399712 G-A Hetero INTERGENIC
SBS Chr7 17807005 C-G Homo INTERGENIC
SBS Chr8 12736864 C-A Hetero INTERGENIC
SBS Chr8 15038220 G-A Hetero INTERGENIC
SBS Chr8 18194512 C-G Hetero INTERGENIC
SBS Chr9 2845906 G-A Homo INTERGENIC
SBS Chr9 2871767 C-A Homo INTERGENIC
SBS Chr9 3291230 T-A Hetero INTERGENIC
SBS Chr9 3947687 T-G Homo SYNONYMOUS_CODING
SBS Chr9 19842231 A-G Hetero SYNONYMOUS_CODING
SBS Chr10 6236801 C-G Homo INTRON
SBS Chr11 17926956 G-A Homo INTERGENIC
SBS Chr11 20596937 T-C Hetero INTERGENIC
SBS Chr11 22101476 G-A Hetero INTERGENIC
SBS Chr11 27244505 T-C Hetero INTRON
SBS Chr12 25677947 T-C Homo INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1365238 1365251 13
Deletion Chr9 2847937 2847942 5
Deletion Chr11 3121142 3121145 3
Deletion Chr9 4384740 4384746 6
Deletion Chr11 9278173 9278177 4
Deletion Chr9 9501102 9501121 19
Deletion Chr5 12394221 12394224 3
Deletion Chr4 13962237 13962239 2
Deletion Chr5 15167001 15197000 29999 6
Deletion Chr11 16360476 16360485 9
Deletion Chr4 18792775 18792779 4
Deletion Chr3 18945805 18945806 1 OsKitaake03g227400
Deletion Chr3 21676812 21676822 10
Deletion Chr12 24735021 24735024 3
Deletion Chr1 25377486 25377488 2
Deletion Chr8 25890588 25890591 3
Deletion Chr5 28640098 28640102 4
Deletion Chr2 28891390 28891400 10

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18735080 18735085 4
Insertion Chr7 28733168 28733171 2
Insertion Chr8 6758453 6758456 2
Insertion Chr10 22795899 22795902 2
Insertion Chr6 89620 89623 2
Insertion Chr10 8681609 8681611 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 32623393 33246283 OsKitaake03g355100
Inversion Chr3 32623403 33246286 OsKitaake03g355100

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 6001151 Chr8 5331140
Translocation Chr9 6002366 Chr8 5330745
Translocation Chr10 8057038 Chr3 19266241 OsKitaake10g050900
Translocation Chr10 13089048 Chr3 19266296

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1871284	T-C	Homo	INTRON
SBS	Chr1	38649411	T-C	Hetero	INTERGENIC
SBS	Chr1	39210041	G-T	Hetero	INTERGENIC
SBS	Chr2	3689707	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g053300
SBS	Chr2	12318272	T-A	Homo	INTERGENIC
SBS	Chr2	15124404	A-T	Hetero	INTRON
SBS	Chr2	32252276	A-T	Homo	INTERGENIC
SBS	Chr3	9333579	G-T	Hetero	INTERGENIC
SBS	Chr3	19323041	C-G	Homo	INTERGENIC
SBS	Chr3	20738909	T-A	Homo	INTERGENIC
SBS	Chr3	28702891	T-A	Hetero	INTERGENIC
SBS	Chr4	311667	C-T	Hetero	INTERGENIC
SBS	Chr4	8891212	A-T	Hetero	INTERGENIC
SBS	Chr4	23893216	A-G	Hetero	INTERGENIC
SBS	Chr4	25875266	G-A	Homo	INTRON
SBS	Chr5	395885	A-G	Homo	INTERGENIC
SBS	Chr5	11019955	G-A	Hetero	INTERGENIC
SBS	Chr6	7038693	T-A	Hetero	INTERGENIC
SBS	Chr6	10559492	G-T	Hetero	INTERGENIC
SBS	Chr6	10559493	A-G	Hetero	INTERGENIC
SBS	Chr6	10559717	T-C	Hetero	INTERGENIC
SBS	Chr6	22151426	A-T	Hetero	INTERGENIC
SBS	Chr6	28262449	C-T	Hetero	INTERGENIC
SBS	Chr7	14399712	G-A	Hetero	INTERGENIC
SBS	Chr7	17807005	C-G	Homo	INTERGENIC
SBS	Chr8	12736864	C-A	Hetero	INTERGENIC
SBS	Chr8	15038220	G-A	Hetero	INTERGENIC
SBS	Chr8	18194512	C-G	Hetero	INTERGENIC
SBS	Chr9	2845906	G-A	Homo	INTERGENIC
SBS	Chr9	2871767	C-A	Homo	INTERGENIC
SBS	Chr9	3291230	T-A	Hetero	INTERGENIC
SBS	Chr9	3947687	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr9	19842231	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr10	6236801	C-G	Homo	INTRON
SBS	Chr11	17926956	G-A	Homo	INTERGENIC
SBS	Chr11	20596937	T-C	Hetero	INTERGENIC
SBS	Chr11	22101476	G-A	Hetero	INTERGENIC
SBS	Chr11	27244505	T-C	Hetero	INTRON
SBS	Chr12	25677947	T-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1365238	1365251	13
Deletion	Chr9	2847937	2847942	5
Deletion	Chr11	3121142	3121145	3
Deletion	Chr9	4384740	4384746	6
Deletion	Chr11	9278173	9278177	4
Deletion	Chr9	9501102	9501121	19
Deletion	Chr5	12394221	12394224	3
Deletion	Chr4	13962237	13962239	2
Deletion	Chr5	15167001	15197000	29999	6
Deletion	Chr11	16360476	16360485	9
Deletion	Chr4	18792775	18792779	4
Deletion	Chr3	18945805	18945806	1	OsKitaake03g227400
Deletion	Chr3	21676812	21676822	10
Deletion	Chr12	24735021	24735024	3
Deletion	Chr1	25377486	25377488	2
Deletion	Chr8	25890588	25890591	3
Deletion	Chr5	28640098	28640102	4
Deletion	Chr2	28891390	28891400	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	32623393	33246283	OsKitaake03g355100
Inversion	Chr3	32623403	33246286	OsKitaake03g355100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes