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Mutant Information

Mutant Name	FN1430-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1430-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 196223 C-T Homo INTERGENIC
SBS Chr1 13080338 G-T Hetero INTRON
SBS Chr1 39269488 A-G Hetero INTRON
SBS Chr1 41806535 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g457200
SBS Chr2 18530387 G-A Hetero INTERGENIC
SBS Chr2 24452022 C-T Hetero INTERGENIC
SBS Chr2 26275064 A-G Hetero INTERGENIC
SBS Chr2 29257206 C-T Hetero INTERGENIC
SBS Chr2 31383020 C-A Homo INTERGENIC
SBS Chr3 23511412 C-A Homo INTERGENIC
SBS Chr3 26551184 G-T Hetero INTERGENIC
SBS Chr3 34425196 C-T Homo INTERGENIC
SBS Chr3 37259614 T-A Homo INTRON
SBS Chr4 2241143 A-T Hetero INTERGENIC
SBS Chr4 8333595 C-G Homo INTERGENIC
SBS Chr4 28087754 A-G Hetero INTERGENIC
SBS Chr6 2023645 G-A Homo INTERGENIC
SBS Chr7 2297626 A-T Hetero UTR_5_PRIME
SBS Chr7 2749469 T-A Hetero INTERGENIC
SBS Chr7 10529822 C-T Homo INTERGENIC
SBS Chr8 1164507 A-T Hetero INTERGENIC
SBS Chr8 1324998 G-A Hetero INTERGENIC
SBS Chr8 3449957 T-A Hetero INTERGENIC
SBS Chr8 3835949 G-A Homo INTERGENIC
SBS Chr8 6480694 C-T Homo INTERGENIC
SBS Chr8 22595724 G-A Hetero INTERGENIC
SBS Chr9 9692588 A-C Homo INTRON
SBS Chr10 636453 C-A Hetero INTERGENIC
SBS Chr10 2302725 A-T Hetero INTRON
SBS Chr10 22068925 A-T Hetero INTERGENIC
SBS Chr11 7076595 A-T Hetero INTERGENIC
SBS Chr11 7624368 G-T Hetero INTERGENIC
SBS Chr11 16501318 A-G Homo SYNONYMOUS_CODING
SBS Chr11 17519542 A-G Hetero INTERGENIC
SBS Chr11 23147011 T-C Hetero INTERGENIC
SBS Chr11 27744659 T-G Hetero INTERGENIC
SBS Chr11 28947906 G-C Hetero INTERGENIC
SBS Chr12 8911366 C-A Hetero INTERGENIC
SBS Chr12 10433076 G-A Hetero INTERGENIC
SBS Chr12 11522770 G-C Hetero INTERGENIC
SBS Chr12 12963918 G-A Hetero INTERGENIC
SBS Chr12 14038535 C-G Hetero INTERGENIC
SBS Chr12 18989312 T-A Homo INTERGENIC
SBS Chr12 26876979 A-G Homo SYNONYMOUS_CODING

Deletions: 88

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 55001 65000 9999 3
Deletion Chr5 165001 189000 23999 7
Deletion Chr5 570001 609000 38999 5
Deletion Chr2 594001 609000 14999 OsKitaake02g009000
Deletion Chr8 912001 932000 19999 2
Deletion Chr9 1141001 1157000 15999
Deletion Chr10 1352005 1352006 1
Deletion Chr9 1598001 1621000 22999 OsKitaake09g009200
Deletion Chr7 1655001 1670000 14999 5
Deletion Chr12 1735001 1750000 14999 4
Deletion Chr3 1845001 1857000 11999 2
Deletion Chr7 1940001 1958000 17999 4
Deletion Chr3 3324001 3346000 21999 3
Deletion Chr4 3360001 3375000 14999
Deletion Chr7 3600363 3600367 4
Deletion Chr9 3932001 3946000 13999 OsKitaake09g020900
Deletion Chr11 4211022 4211026 4
Deletion Chr1 5396001 5412000 15999 OsKitaake01g069900
Deletion Chr8 5416001 5444000 27999 4
Deletion Chr8 5863911 5863913 2
Deletion Chr5 6199001 6213000 13999 OsKitaake05g064100
Deletion Chr10 6611001 6624000 12999 OsKitaake10g045132
Deletion Chr12 6885679 6885680 1
Deletion Chr9 6928001 6954000 25999 OsKitaake09g039700
Deletion Chr12 7248001 7260000 11999 2
Deletion Chr7 7545001 7558000 12999
Deletion Chr8 7606536 7606553 17
Deletion Chr9 7978001 7991000 12999 OsKitaake09g045100
Deletion Chr9 8532001 8542000 9999
Deletion Chr9 8753001 8779000 25999 OsKitaake09g051400
Deletion Chr1 9270001 9284000 13999 OsKitaake01g119300
Deletion Chr9 9454399 9454400 1
Deletion Chr6 9914001 9931000 16999 2
Deletion Chr4 10188001 10216000 27999
Deletion Chr4 10537001 10554000 16999 OsKitaake04g055600
Deletion Chr12 10950001 10961000 10999 OsKitaake12g101500
Deletion Chr2 11146001 11158000 11999 2
Deletion Chr12 11330001 11357000 26999 OsKitaake12g102301
Deletion Chr2 11541001 11550000 8999
Deletion Chr9 12601001 12623000 21999 OsKitaake09g083200
Deletion Chr3 13112001 13119000 6999 OsKitaake03g175700
Deletion Chr11 13409001 13426000 16999 2
Deletion Chr10 13866001 13882000 15999 OsKitaake10g084800
Deletion Chr5 14242001 14251000 8999 OsKitaake05g109300
Deletion Chr9 14991001 15006000 14999
Deletion Chr10 15181001 15196000 14999 3
Deletion Chr8 15510001 15521000 10999 OsKitaake08g120000
Deletion Chr3 15543001 15581000 37999
Deletion Chr2 15606255 15606259 4
Deletion Chr3 16016001 16030000 13999 3
Deletion Chr9 16110450 16110451 1
Deletion Chr7 16169001 16182000 12999 OsKitaake07g134100
Deletion Chr2 16303001 16320000 16999 OsKitaake02g167700
Deletion Chr7 16383001 16410000 26999
Deletion Chr1 16657001 16688000 30999 2
Deletion Chr8 16813001 16826000 12999
Deletion Chr5 17063001 17096000 32999 OsKitaake05g131400
Deletion Chr4 17090001 17104000 13999 OsKitaake04g083400
Deletion Chr10 17478001 17505000 26999 OsKitaake10g119300
Deletion Chr2 17538001 17561000 22999 OsKitaake02g176100
Deletion Chr3 17682308 17682321 13
Deletion Chr8 17869132 17869139 7
Deletion Chr6 18354001 18385000 30999 OsKitaake06g168100
Deletion Chr10 18694001 18708000 13999 2
Deletion Chr12 19267001 19281000 13999 OsKitaake12g144200
Deletion Chr8 19689001 19708000 18999 OsKitaake08g144800
Deletion Chr9 19895001 19907000 11999 OsKitaake09g165600
Deletion Chr8 20034802 20034812 10
Deletion Chr4 20585001 20605000 19999 2
Deletion Chr3 20872001 20894000 21999 2
Deletion Chr1 21042001 21053000 10999 2
Deletion Chr1 21237001 21252000 14999
Deletion Chr6 21346001 21361000 14999
Deletion Chr9 21547001 21555000 7999 2
Deletion Chr4 22170001 22182000 11999 OsKitaake04g129601
Deletion Chr10 22683001 22699000 15999 OsKitaake10g187800
Deletion Chr12 23799001 23862000 62999 9
Deletion Chr6 24030001 24048000 17999
Deletion Chr1 26054001 26070000 15999 OsKitaake01g253701
Deletion Chr1 26187899 26187901 2 OsKitaake01g255300
Deletion Chr6 26265527 26265538 11
Deletion Chr7 26840001 26865000 24999 3
Deletion Chr6 28340001 28350000 9999
Deletion Chr3 28646001 28664000 17999 OsKitaake03g297000
Deletion Chr5 29763446 29763448 2
Deletion Chr2 30052001 30061000 8999 OsKitaake02g305200
Deletion Chr3 31736001 31746000 9999 OsKitaake03g334600
Deletion Chr3 37498656 37498669 13

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 29561350 29561353 2
Insertion Chr7 23502520 23502522 1
Insertion Chr11 7413998 7414001 2
Insertion Chr2 13865666 13865669 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 3691312 3752674
Inversion Chr7 3705994 3752680 OsKitaake07g047700
Inversion Chr3 11834087 11998297 OsKitaake03g163101

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 373035 Chr11 214194
Translocation Chr3 11834091 Chr1 43941580 OsKitaake01g490000
Translocation Chr3 11834232 Chr1 43941569 OsKitaake01g490000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	196223	C-T	Homo	INTERGENIC
SBS	Chr1	13080338	G-T	Hetero	INTRON
SBS	Chr1	39269488	A-G	Hetero	INTRON
SBS	Chr1	41806535	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g457200
SBS	Chr2	18530387	G-A	Hetero	INTERGENIC
SBS	Chr2	24452022	C-T	Hetero	INTERGENIC
SBS	Chr2	26275064	A-G	Hetero	INTERGENIC
SBS	Chr2	29257206	C-T	Hetero	INTERGENIC
SBS	Chr2	31383020	C-A	Homo	INTERGENIC
SBS	Chr3	23511412	C-A	Homo	INTERGENIC
SBS	Chr3	26551184	G-T	Hetero	INTERGENIC
SBS	Chr3	34425196	C-T	Homo	INTERGENIC
SBS	Chr3	37259614	T-A	Homo	INTRON
SBS	Chr4	2241143	A-T	Hetero	INTERGENIC
SBS	Chr4	8333595	C-G	Homo	INTERGENIC
SBS	Chr4	28087754	A-G	Hetero	INTERGENIC
SBS	Chr6	2023645	G-A	Homo	INTERGENIC
SBS	Chr7	2297626	A-T	Hetero	UTR_5_PRIME
SBS	Chr7	2749469	T-A	Hetero	INTERGENIC
SBS	Chr7	10529822	C-T	Homo	INTERGENIC
SBS	Chr8	1164507	A-T	Hetero	INTERGENIC
SBS	Chr8	1324998	G-A	Hetero	INTERGENIC
SBS	Chr8	3449957	T-A	Hetero	INTERGENIC
SBS	Chr8	3835949	G-A	Homo	INTERGENIC
SBS	Chr8	6480694	C-T	Homo	INTERGENIC
SBS	Chr8	22595724	G-A	Hetero	INTERGENIC
SBS	Chr9	9692588	A-C	Homo	INTRON
SBS	Chr10	636453	C-A	Hetero	INTERGENIC
SBS	Chr10	2302725	A-T	Hetero	INTRON
SBS	Chr10	22068925	A-T	Hetero	INTERGENIC
SBS	Chr11	7076595	A-T	Hetero	INTERGENIC
SBS	Chr11	7624368	G-T	Hetero	INTERGENIC
SBS	Chr11	16501318	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr11	17519542	A-G	Hetero	INTERGENIC
SBS	Chr11	23147011	T-C	Hetero	INTERGENIC
SBS	Chr11	27744659	T-G	Hetero	INTERGENIC
SBS	Chr11	28947906	G-C	Hetero	INTERGENIC
SBS	Chr12	8911366	C-A	Hetero	INTERGENIC
SBS	Chr12	10433076	G-A	Hetero	INTERGENIC
SBS	Chr12	11522770	G-C	Hetero	INTERGENIC
SBS	Chr12	12963918	G-A	Hetero	INTERGENIC
SBS	Chr12	14038535	C-G	Hetero	INTERGENIC
SBS	Chr12	18989312	T-A	Homo	INTERGENIC
SBS	Chr12	26876979	A-G	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	55001	65000	9999	3
Deletion	Chr5	165001	189000	23999	7
Deletion	Chr5	570001	609000	38999	5
Deletion	Chr2	594001	609000	14999	OsKitaake02g009000
Deletion	Chr8	912001	932000	19999	2
Deletion	Chr9	1141001	1157000	15999
Deletion	Chr10	1352005	1352006	1
Deletion	Chr9	1598001	1621000	22999	OsKitaake09g009200
Deletion	Chr7	1655001	1670000	14999	5
Deletion	Chr12	1735001	1750000	14999	4
Deletion	Chr3	1845001	1857000	11999	2
Deletion	Chr7	1940001	1958000	17999	4
Deletion	Chr3	3324001	3346000	21999	3
Deletion	Chr4	3360001	3375000	14999
Deletion	Chr7	3600363	3600367	4
Deletion	Chr9	3932001	3946000	13999	OsKitaake09g020900
Deletion	Chr11	4211022	4211026	4
Deletion	Chr1	5396001	5412000	15999	OsKitaake01g069900
Deletion	Chr8	5416001	5444000	27999	4
Deletion	Chr8	5863911	5863913	2
Deletion	Chr5	6199001	6213000	13999	OsKitaake05g064100
Deletion	Chr10	6611001	6624000	12999	OsKitaake10g045132
Deletion	Chr12	6885679	6885680	1
Deletion	Chr9	6928001	6954000	25999	OsKitaake09g039700
Deletion	Chr12	7248001	7260000	11999	2
Deletion	Chr7	7545001	7558000	12999
Deletion	Chr8	7606536	7606553	17
Deletion	Chr9	7978001	7991000	12999	OsKitaake09g045100
Deletion	Chr9	8532001	8542000	9999
Deletion	Chr9	8753001	8779000	25999	OsKitaake09g051400
Deletion	Chr1	9270001	9284000	13999	OsKitaake01g119300
Deletion	Chr9	9454399	9454400	1
Deletion	Chr6	9914001	9931000	16999	2
Deletion	Chr4	10188001	10216000	27999
Deletion	Chr4	10537001	10554000	16999	OsKitaake04g055600
Deletion	Chr12	10950001	10961000	10999	OsKitaake12g101500
Deletion	Chr2	11146001	11158000	11999	2
Deletion	Chr12	11330001	11357000	26999	OsKitaake12g102301
Deletion	Chr2	11541001	11550000	8999
Deletion	Chr9	12601001	12623000	21999	OsKitaake09g083200
Deletion	Chr3	13112001	13119000	6999	OsKitaake03g175700
Deletion	Chr11	13409001	13426000	16999	2
Deletion	Chr10	13866001	13882000	15999	OsKitaake10g084800
Deletion	Chr5	14242001	14251000	8999	OsKitaake05g109300
Deletion	Chr9	14991001	15006000	14999
Deletion	Chr10	15181001	15196000	14999	3
Deletion	Chr8	15510001	15521000	10999	OsKitaake08g120000
Deletion	Chr3	15543001	15581000	37999
Deletion	Chr2	15606255	15606259	4
Deletion	Chr3	16016001	16030000	13999	3
Deletion	Chr9	16110450	16110451	1
Deletion	Chr7	16169001	16182000	12999	OsKitaake07g134100
Deletion	Chr2	16303001	16320000	16999	OsKitaake02g167700
Deletion	Chr7	16383001	16410000	26999
Deletion	Chr1	16657001	16688000	30999	2
Deletion	Chr8	16813001	16826000	12999
Deletion	Chr5	17063001	17096000	32999	OsKitaake05g131400
Deletion	Chr4	17090001	17104000	13999	OsKitaake04g083400
Deletion	Chr10	17478001	17505000	26999	OsKitaake10g119300
Deletion	Chr2	17538001	17561000	22999	OsKitaake02g176100
Deletion	Chr3	17682308	17682321	13
Deletion	Chr8	17869132	17869139	7
Deletion	Chr6	18354001	18385000	30999	OsKitaake06g168100
Deletion	Chr10	18694001	18708000	13999	2
Deletion	Chr12	19267001	19281000	13999	OsKitaake12g144200
Deletion	Chr8	19689001	19708000	18999	OsKitaake08g144800
Deletion	Chr9	19895001	19907000	11999	OsKitaake09g165600
Deletion	Chr8	20034802	20034812	10
Deletion	Chr4	20585001	20605000	19999	2
Deletion	Chr3	20872001	20894000	21999	2
Deletion	Chr1	21042001	21053000	10999	2
Deletion	Chr1	21237001	21252000	14999
Deletion	Chr6	21346001	21361000	14999
Deletion	Chr9	21547001	21555000	7999	2
Deletion	Chr4	22170001	22182000	11999	OsKitaake04g129601
Deletion	Chr10	22683001	22699000	15999	OsKitaake10g187800
Deletion	Chr12	23799001	23862000	62999	9
Deletion	Chr6	24030001	24048000	17999
Deletion	Chr1	26054001	26070000	15999	OsKitaake01g253701
Deletion	Chr1	26187899	26187901	2	OsKitaake01g255300
Deletion	Chr6	26265527	26265538	11
Deletion	Chr7	26840001	26865000	24999	3
Deletion	Chr6	28340001	28350000	9999
Deletion	Chr3	28646001	28664000	17999	OsKitaake03g297000
Deletion	Chr5	29763446	29763448	2
Deletion	Chr2	30052001	30061000	8999	OsKitaake02g305200
Deletion	Chr3	31736001	31746000	9999	OsKitaake03g334600
Deletion	Chr3	37498656	37498669	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3691312	3752674
Inversion	Chr7	3705994	3752680	OsKitaake07g047700
Inversion	Chr3	11834087	11998297	OsKitaake03g163101

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes