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Mutant Information

Mutant Name	FN1431-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1431-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17305114 G-C Hetero INTERGENIC
SBS Chr1 33543605 G-C Homo INTERGENIC
SBS Chr2 22961764 A-G Hetero INTERGENIC
SBS Chr2 32167980 T-G Hetero INTRON
SBS Chr3 14926020 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g194200
SBS Chr3 23509876 G-A Hetero INTERGENIC
SBS Chr3 35509430 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g389100
SBS Chr4 9525276 C-T Homo INTERGENIC
SBS Chr5 7210996 C-T Homo INTRON
SBS Chr5 9047854 C-A Hetero INTERGENIC
SBS Chr5 29741013 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g284100
SBS Chr6 11381183 T-C Homo INTERGENIC
SBS Chr6 17276726 G-A Hetero INTERGENIC
SBS Chr6 22330584 A-G Homo INTERGENIC
SBS Chr7 8629322 A-G Homo INTERGENIC
SBS Chr7 15099002 C-T Homo SYNONYMOUS_CODING
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr7 29046801 G-T Homo INTERGENIC
SBS Chr8 11858105 C-T Hetero INTERGENIC
SBS Chr8 12538282 T-G Hetero INTERGENIC
SBS Chr8 25891855 T-A Hetero INTERGENIC
SBS Chr10 3241985 G-T Hetero INTERGENIC
SBS Chr10 7364789 A-G Hetero INTERGENIC
SBS Chr12 24401224 T-C Hetero INTERGENIC
SBS Chr12 26039279 T-C Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 7533933 7533936 3
Deletion Chr1 8116863 8116916 53
Deletion Chr1 10116955 10116956 1
Deletion Chr1 10269037 10269040 3
Deletion Chr3 11427003 11427005 2
Deletion Chr11 11543207 11543209 2
Deletion Chr1 15315207 15315208 1
Deletion Chr10 21021001 21047000 25999
Deletion Chr4 27684592 27684594 2
Deletion Chr2 27849001 27874000 24999 9
Deletion Chr4 28155543 28155544 1
Deletion Chr8 28420382 28420394 12

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 36828068 36828071 2
Insertion Chr4 23126672 23126680 7
Insertion Chr12 6580688 6580691 2
Insertion Chr4 9891532 9891534 1
Insertion Chr5 12424107 12424109 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17305114	G-C	Hetero	INTERGENIC
SBS	Chr1	33543605	G-C	Homo	INTERGENIC
SBS	Chr2	22961764	A-G	Hetero	INTERGENIC
SBS	Chr2	32167980	T-G	Hetero	INTRON
SBS	Chr3	14926020	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g194200
SBS	Chr3	23509876	G-A	Hetero	INTERGENIC
SBS	Chr3	35509430	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g389100
SBS	Chr4	9525276	C-T	Homo	INTERGENIC
SBS	Chr5	7210996	C-T	Homo	INTRON
SBS	Chr5	9047854	C-A	Hetero	INTERGENIC
SBS	Chr5	29741013	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g284100
SBS	Chr6	11381183	T-C	Homo	INTERGENIC
SBS	Chr6	17276726	G-A	Hetero	INTERGENIC
SBS	Chr6	22330584	A-G	Homo	INTERGENIC
SBS	Chr7	8629322	A-G	Homo	INTERGENIC
SBS	Chr7	15099002	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr7	29046801	G-T	Homo	INTERGENIC
SBS	Chr8	11858105	C-T	Hetero	INTERGENIC
SBS	Chr8	12538282	T-G	Hetero	INTERGENIC
SBS	Chr8	25891855	T-A	Hetero	INTERGENIC
SBS	Chr10	3241985	G-T	Hetero	INTERGENIC
SBS	Chr10	7364789	A-G	Hetero	INTERGENIC
SBS	Chr12	24401224	T-C	Hetero	INTERGENIC
SBS	Chr12	26039279	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	7533933	7533936	3
Deletion	Chr1	8116863	8116916	53
Deletion	Chr1	10116955	10116956	1
Deletion	Chr1	10269037	10269040	3
Deletion	Chr3	11427003	11427005	2
Deletion	Chr11	11543207	11543209	2
Deletion	Chr1	15315207	15315208	1
Deletion	Chr10	21021001	21047000	25999
Deletion	Chr4	27684592	27684594	2
Deletion	Chr2	27849001	27874000	24999	9
Deletion	Chr4	28155543	28155544	1
Deletion	Chr8	28420382	28420394	12

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes