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Mutant Information

Mutant Name	FN1433-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1433-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4955965 A-T Hetero INTERGENIC
SBS Chr2 11750085 T-A Hetero INTERGENIC
SBS Chr2 18733749 A-T Hetero INTERGENIC
SBS Chr3 6679570 C-T Homo INTERGENIC
SBS Chr3 10717387 G-T Homo UTR_3_PRIME
SBS Chr3 10845422 A-T Hetero INTERGENIC
SBS Chr3 16467374 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 34036305 G-A Hetero INTRON
SBS Chr5 976166 T-C Hetero INTERGENIC
SBS Chr5 976174 T-C Hetero INTERGENIC
SBS Chr5 14603471 C-G Homo INTERGENIC
SBS Chr5 17133610 G-A Hetero INTERGENIC
SBS Chr5 25393772 C-G Homo INTERGENIC
SBS Chr6 12491686 T-A Homo INTERGENIC
SBS Chr6 12491687 C-A Homo INTERGENIC
SBS Chr6 21491319 A-G Hetero INTRON
SBS Chr6 22688702 T-C Hetero INTERGENIC
SBS Chr7 10970864 C-T Hetero INTERGENIC
SBS Chr7 10970867 G-A Hetero INTERGENIC
SBS Chr7 10970868 G-T Hetero INTERGENIC
SBS Chr7 18018409 G-A Hetero INTERGENIC
SBS Chr7 20516820 C-T Hetero INTERGENIC
SBS Chr8 15824398 T-C Hetero INTERGENIC
SBS Chr10 14685737 A-T Hetero INTERGENIC
SBS Chr11 5670293 A-G Homo INTERGENIC
SBS Chr11 14073892 C-T Hetero INTERGENIC
SBS Chr11 18985106 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 19097798 T-C Hetero INTERGENIC
SBS Chr12 17822247 G-T Hetero INTERGENIC
SBS Chr12 18869651 A-T Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 4766197 4766198 1
Deletion Chr2 6811258 6811269 11
Deletion Chr12 7999508 7999510 2
Deletion Chr5 8258842 8258843 1
Deletion Chr8 9374650 9374658 8
Deletion Chr6 10379712 10379714 2
Deletion Chr7 10970311 10970313 2
Deletion Chr8 11952425 11952427 2
Deletion Chr1 16469532 16469537 5
Deletion Chr7 18587076 18587080 4
Deletion Chr8 22775936 22775937 1
Deletion Chr12 22778493 22778501 8
Deletion Chr11 23329670 23329672 2
Deletion Chr5 24652456 24652461 5
Deletion Chr4 27843955 27843956 1
Deletion Chr2 27880001 27945000 64999 7
Deletion Chr7 27898138 27898141 3
Deletion Chr4 28822716 28822718 2
Deletion Chr5 29473824 29473834 10
Deletion Chr1 41900496 41900506 10
Deletion Chr1 44049056 44049061 5 OsKitaake01g491300

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 23427951 23427955 3
Insertion Chr3 6885482 6885485 2 OsKitaake03g097400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4955965	A-T	Hetero	INTERGENIC
SBS	Chr2	11750085	T-A	Hetero	INTERGENIC
SBS	Chr2	18733749	A-T	Hetero	INTERGENIC
SBS	Chr3	6679570	C-T	Homo	INTERGENIC
SBS	Chr3	10717387	G-T	Homo	UTR_3_PRIME
SBS	Chr3	10845422	A-T	Hetero	INTERGENIC
SBS	Chr3	16467374	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	34036305	G-A	Hetero	INTRON
SBS	Chr5	976166	T-C	Hetero	INTERGENIC
SBS	Chr5	976174	T-C	Hetero	INTERGENIC
SBS	Chr5	14603471	C-G	Homo	INTERGENIC
SBS	Chr5	17133610	G-A	Hetero	INTERGENIC
SBS	Chr5	25393772	C-G	Homo	INTERGENIC
SBS	Chr6	12491686	T-A	Homo	INTERGENIC
SBS	Chr6	12491687	C-A	Homo	INTERGENIC
SBS	Chr6	21491319	A-G	Hetero	INTRON
SBS	Chr6	22688702	T-C	Hetero	INTERGENIC
SBS	Chr7	10970864	C-T	Hetero	INTERGENIC
SBS	Chr7	10970867	G-A	Hetero	INTERGENIC
SBS	Chr7	10970868	G-T	Hetero	INTERGENIC
SBS	Chr7	18018409	G-A	Hetero	INTERGENIC
SBS	Chr7	20516820	C-T	Hetero	INTERGENIC
SBS	Chr8	15824398	T-C	Hetero	INTERGENIC
SBS	Chr10	14685737	A-T	Hetero	INTERGENIC
SBS	Chr11	5670293	A-G	Homo	INTERGENIC
SBS	Chr11	14073892	C-T	Hetero	INTERGENIC
SBS	Chr11	18985106	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	19097798	T-C	Hetero	INTERGENIC
SBS	Chr12	17822247	G-T	Hetero	INTERGENIC
SBS	Chr12	18869651	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	4766197	4766198	1
Deletion	Chr2	6811258	6811269	11
Deletion	Chr12	7999508	7999510	2
Deletion	Chr5	8258842	8258843	1
Deletion	Chr8	9374650	9374658	8
Deletion	Chr6	10379712	10379714	2
Deletion	Chr7	10970311	10970313	2
Deletion	Chr8	11952425	11952427	2
Deletion	Chr1	16469532	16469537	5
Deletion	Chr7	18587076	18587080	4
Deletion	Chr8	22775936	22775937	1
Deletion	Chr12	22778493	22778501	8
Deletion	Chr11	23329670	23329672	2
Deletion	Chr5	24652456	24652461	5
Deletion	Chr4	27843955	27843956	1
Deletion	Chr2	27880001	27945000	64999	7
Deletion	Chr7	27898138	27898141	3
Deletion	Chr4	28822716	28822718	2
Deletion	Chr5	29473824	29473834	10
Deletion	Chr1	41900496	41900506	10
Deletion	Chr1	44049056	44049061	5	OsKitaake01g491300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes