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Mutant Information

Mutant Name	FN1434-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1434-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6098432 C-T Hetero INTERGENIC
SBS Chr1 10530566 G-A Hetero INTRON
SBS Chr1 11111196 C-A Hetero INTRON
SBS Chr1 31483298 T-C Homo UTR_3_PRIME
SBS Chr1 41521908 G-A Homo INTERGENIC
SBS Chr2 36016434 A-T Homo UTR_5_PRIME
SBS Chr3 27062352 G-A Hetero INTRON
SBS Chr3 27062353 A-C Hetero INTRON
SBS Chr4 4622891 T-C Hetero INTERGENIC
SBS Chr4 30884352 G-A Homo INTERGENIC
SBS Chr5 9643272 C-T Hetero INTERGENIC
SBS Chr5 10232567 G-T Hetero INTERGENIC
SBS Chr5 10703968 C-T Hetero INTERGENIC
SBS Chr5 12186707 C-T Hetero INTERGENIC
SBS Chr6 6291710 T-A Hetero INTERGENIC
SBS Chr6 8788002 G-T Hetero INTERGENIC
SBS Chr6 8788003 A-T Hetero INTERGENIC
SBS Chr6 22586435 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g198703
SBS Chr6 23791248 T-C Hetero INTERGENIC
SBS Chr6 27108198 A-T Hetero INTERGENIC
SBS Chr7 22141352 T-A Hetero INTERGENIC
SBS Chr8 3941926 T-A Homo INTERGENIC
SBS Chr8 15526668 G-A Hetero INTERGENIC
SBS Chr8 15667557 C-T Homo INTERGENIC
SBS Chr10 72267 A-G Homo INTERGENIC
SBS Chr10 3764483 A-G Hetero INTERGENIC
SBS Chr10 5628860 C-G Hetero INTERGENIC
SBS Chr11 7161687 C-G Homo INTERGENIC
SBS Chr11 7843544 G-A Homo START_GAINED
SBS Chr11 14198431 G-A Hetero INTERGENIC
SBS Chr11 14198432 G-A Hetero INTERGENIC
SBS Chr11 14927683 G-A Hetero INTERGENIC
SBS Chr11 17616330 G-T Hetero INTERGENIC
SBS Chr12 14524536 A-C Homo INTERGENIC
SBS Chr12 17319354 A-G Homo INTRON

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 664506 664507 1
Deletion Chr8 905016 905021 5
Deletion Chr3 2523001 2539000 15999 2
Deletion Chr1 2860352 2860359 7
Deletion Chr8 2984792 2984797 5
Deletion Chr11 3024001 3130000 105999 12
Deletion Chr5 3406001 3415000 8999
Deletion Chr2 3445001 3453000 7999 OsKitaake02g050200
Deletion Chr6 4189001 4203000 13999 2
Deletion Chr1 9955001 9971000 15999 OsKitaake01g126200
Deletion Chr1 14677001 14693000 15999 OsKitaake01g166200
Deletion Chr2 16080001 16088000 7999 OsKitaake02g166300
Deletion Chr6 16138059 16138061 2
Deletion Chr10 16561698 16561701 3
Deletion Chr1 16672001 16685000 12999 OsKitaake01g177400
Deletion Chr4 17637001 17650000 12999 OsKitaake04g088300
Deletion Chr7 18528001 18537000 8999 OsKitaake07g150700
Deletion Chr7 18814001 18844000 29999 2
Deletion Chr10 22092175 22092187 12
Deletion Chr3 22981001 22990000 8999
Deletion Chr6 27303529 27303530 1
Deletion Chr6 27914001 27933000 18999 2
Deletion Chr3 34835001 34845000 9999 OsKitaake03g380100
Deletion Chr2 36017026 36017035 9
Deletion Chr1 38704001 38714000 9999 OsKitaake01g413900
Deletion Chr1 42701001 42712000 10999

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 16521293 16521296 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2020606 Chr5 10231248 OsKitaake11g029300
Translocation Chr11 2020609 Chr5 10231208 OsKitaake11g029300
Translocation Chr7 17974233 Chr2 24659387 OsKitaake02g245300
Translocation Chr7 18818955 Chr2 24672819 OsKitaake02g245400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6098432	C-T	Hetero	INTERGENIC
SBS	Chr1	10530566	G-A	Hetero	INTRON
SBS	Chr1	11111196	C-A	Hetero	INTRON
SBS	Chr1	31483298	T-C	Homo	UTR_3_PRIME
SBS	Chr1	41521908	G-A	Homo	INTERGENIC
SBS	Chr2	36016434	A-T	Homo	UTR_5_PRIME
SBS	Chr3	27062352	G-A	Hetero	INTRON
SBS	Chr3	27062353	A-C	Hetero	INTRON
SBS	Chr4	4622891	T-C	Hetero	INTERGENIC
SBS	Chr4	30884352	G-A	Homo	INTERGENIC
SBS	Chr5	9643272	C-T	Hetero	INTERGENIC
SBS	Chr5	10232567	G-T	Hetero	INTERGENIC
SBS	Chr5	10703968	C-T	Hetero	INTERGENIC
SBS	Chr5	12186707	C-T	Hetero	INTERGENIC
SBS	Chr6	6291710	T-A	Hetero	INTERGENIC
SBS	Chr6	8788002	G-T	Hetero	INTERGENIC
SBS	Chr6	8788003	A-T	Hetero	INTERGENIC
SBS	Chr6	22586435	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g198703
SBS	Chr6	23791248	T-C	Hetero	INTERGENIC
SBS	Chr6	27108198	A-T	Hetero	INTERGENIC
SBS	Chr7	22141352	T-A	Hetero	INTERGENIC
SBS	Chr8	3941926	T-A	Homo	INTERGENIC
SBS	Chr8	15526668	G-A	Hetero	INTERGENIC
SBS	Chr8	15667557	C-T	Homo	INTERGENIC
SBS	Chr10	72267	A-G	Homo	INTERGENIC
SBS	Chr10	3764483	A-G	Hetero	INTERGENIC
SBS	Chr10	5628860	C-G	Hetero	INTERGENIC
SBS	Chr11	7161687	C-G	Homo	INTERGENIC
SBS	Chr11	7843544	G-A	Homo	START_GAINED
SBS	Chr11	14198431	G-A	Hetero	INTERGENIC
SBS	Chr11	14198432	G-A	Hetero	INTERGENIC
SBS	Chr11	14927683	G-A	Hetero	INTERGENIC
SBS	Chr11	17616330	G-T	Hetero	INTERGENIC
SBS	Chr12	14524536	A-C	Homo	INTERGENIC
SBS	Chr12	17319354	A-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	664506	664507	1
Deletion	Chr8	905016	905021	5
Deletion	Chr3	2523001	2539000	15999	2
Deletion	Chr1	2860352	2860359	7
Deletion	Chr8	2984792	2984797	5
Deletion	Chr11	3024001	3130000	105999	12
Deletion	Chr5	3406001	3415000	8999
Deletion	Chr2	3445001	3453000	7999	OsKitaake02g050200
Deletion	Chr6	4189001	4203000	13999	2
Deletion	Chr1	9955001	9971000	15999	OsKitaake01g126200
Deletion	Chr1	14677001	14693000	15999	OsKitaake01g166200
Deletion	Chr2	16080001	16088000	7999	OsKitaake02g166300
Deletion	Chr6	16138059	16138061	2
Deletion	Chr10	16561698	16561701	3
Deletion	Chr1	16672001	16685000	12999	OsKitaake01g177400
Deletion	Chr4	17637001	17650000	12999	OsKitaake04g088300
Deletion	Chr7	18528001	18537000	8999	OsKitaake07g150700
Deletion	Chr7	18814001	18844000	29999	2
Deletion	Chr10	22092175	22092187	12
Deletion	Chr3	22981001	22990000	8999
Deletion	Chr6	27303529	27303530	1
Deletion	Chr6	27914001	27933000	18999	2
Deletion	Chr3	34835001	34845000	9999	OsKitaake03g380100
Deletion	Chr2	36017026	36017035	9
Deletion	Chr1	38704001	38714000	9999	OsKitaake01g413900
Deletion	Chr1	42701001	42712000	10999

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2020606	Chr5	10231248	OsKitaake11g029300
Translocation	Chr11	2020609	Chr5	10231208	OsKitaake11g029300
Translocation	Chr7	17974233	Chr2	24659387	OsKitaake02g245300
Translocation	Chr7	18818955	Chr2	24672819	OsKitaake02g245400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes