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Mutant Information

Mutant Name	FN1435-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1435-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4717337 C-T Homo INTERGENIC
SBS Chr2 10447002 T-C Hetero INTERGENIC
SBS Chr2 10787551 G-T Hetero INTERGENIC
SBS Chr2 27591949 T-C Hetero INTERGENIC
SBS Chr2 28133495 C-T Hetero INTERGENIC
SBS Chr2 28549073 C-T Hetero INTERGENIC
SBS Chr3 2519291 C-T Hetero INTERGENIC
SBS Chr3 25123625 T-C Hetero INTRON
SBS Chr3 26008405 A-G Hetero INTERGENIC
SBS Chr3 26126823 T-C Hetero INTERGENIC
SBS Chr4 28828954 A-G Hetero INTERGENIC
SBS Chr5 19832472 G-A Homo SYNONYMOUS_CODING
SBS Chr5 19832473 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g157600
SBS Chr5 22612914 G-A Homo UTR_3_PRIME
SBS Chr5 27555963 G-T Homo INTERGENIC
SBS Chr6 37738 G-A Hetero INTERGENIC
SBS Chr6 2155761 G-T Hetero INTERGENIC
SBS Chr6 8987901 A-G Hetero INTERGENIC
SBS Chr6 9683102 C-T Hetero INTERGENIC
SBS Chr6 15202134 C-T Hetero INTERGENIC
SBS Chr7 865980 G-A Hetero INTERGENIC
SBS Chr7 2825557 C-T Hetero INTERGENIC
SBS Chr7 6179333 C-T Hetero INTERGENIC
SBS Chr7 15810543 C-T Homo INTERGENIC
SBS Chr7 26011998 C-T Hetero INTERGENIC
SBS Chr8 5257743 G-A Homo INTERGENIC
SBS Chr8 14832150 T-C Homo INTERGENIC
SBS Chr9 3776228 G-A Homo INTERGENIC
SBS Chr9 7519237 C-T Homo INTERGENIC
SBS Chr9 7975139 G-A Hetero INTERGENIC
SBS Chr9 11086487 T-C Hetero INTRON
SBS Chr10 15455819 G-T Hetero INTERGENIC
SBS Chr11 3723197 C-T Hetero INTERGENIC
SBS Chr11 18118902 T-A Hetero INTERGENIC
SBS Chr11 22990451 A-G Hetero INTERGENIC
SBS Chr12 9846992 C-T Hetero INTERGENIC
SBS Chr12 12223095 G-A Hetero INTERGENIC
SBS Chr12 25785585 C-A Homo NON_SYNONYMOUS_CODING OsKitaake12g213200
SBS Chr12 26222564 A-G Homo INTRON
SBS Chr12 26572811 G-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3906349 3906357 8
Deletion Chr9 5226720 5226721 1
Deletion Chr7 6837717 6837718 1
Deletion Chr2 8469001 8483000 13999 3
Deletion Chr12 9611428 9611429 1
Deletion Chr11 12459798 12459799 1
Deletion Chr7 13718001 13730000 11999
Deletion Chr11 15461804 15461805 1
Deletion Chr10 18564901 18564902 1
Deletion Chr5 22035796 22035799 3
Deletion Chr8 25574964 25574970 6
Deletion Chr1 26693108 26693111 3
Deletion Chr1 28464250 28464255 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17314186 17314189 2
Insertion Chr3 20042400 20042402 1
Insertion Chr5 12594783 12594785 1

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 4584564 4586897
Inversion Chr3 4584571 4586905
Inversion Chr11 4800936 5748405
Inversion Chr11 4800948 5748424
Inversion Chr11 21064229 21985835 OsKitaake11g167200
Inversion Chr11 21064231 21985857 OsKitaake11g167200
Inversion Chr2 28013724 28689864 2
Inversion Chr2 28013733 28689870 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 16650719 Chr1 6412214
Translocation Chr11 16650934 Chr1 6412208
Translocation Chr12 24126279 Chr2 13763811
Translocation Chr5 28736448 Chr1 31235459 OsKitaake05g269800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4717337	C-T	Homo	INTERGENIC
SBS	Chr2	10447002	T-C	Hetero	INTERGENIC
SBS	Chr2	10787551	G-T	Hetero	INTERGENIC
SBS	Chr2	27591949	T-C	Hetero	INTERGENIC
SBS	Chr2	28133495	C-T	Hetero	INTERGENIC
SBS	Chr2	28549073	C-T	Hetero	INTERGENIC
SBS	Chr3	2519291	C-T	Hetero	INTERGENIC
SBS	Chr3	25123625	T-C	Hetero	INTRON
SBS	Chr3	26008405	A-G	Hetero	INTERGENIC
SBS	Chr3	26126823	T-C	Hetero	INTERGENIC
SBS	Chr4	28828954	A-G	Hetero	INTERGENIC
SBS	Chr5	19832472	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	19832473	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g157600
SBS	Chr5	22612914	G-A	Homo	UTR_3_PRIME
SBS	Chr5	27555963	G-T	Homo	INTERGENIC
SBS	Chr6	37738	G-A	Hetero	INTERGENIC
SBS	Chr6	2155761	G-T	Hetero	INTERGENIC
SBS	Chr6	8987901	A-G	Hetero	INTERGENIC
SBS	Chr6	9683102	C-T	Hetero	INTERGENIC
SBS	Chr6	15202134	C-T	Hetero	INTERGENIC
SBS	Chr7	865980	G-A	Hetero	INTERGENIC
SBS	Chr7	2825557	C-T	Hetero	INTERGENIC
SBS	Chr7	6179333	C-T	Hetero	INTERGENIC
SBS	Chr7	15810543	C-T	Homo	INTERGENIC
SBS	Chr7	26011998	C-T	Hetero	INTERGENIC
SBS	Chr8	5257743	G-A	Homo	INTERGENIC
SBS	Chr8	14832150	T-C	Homo	INTERGENIC
SBS	Chr9	3776228	G-A	Homo	INTERGENIC
SBS	Chr9	7519237	C-T	Homo	INTERGENIC
SBS	Chr9	7975139	G-A	Hetero	INTERGENIC
SBS	Chr9	11086487	T-C	Hetero	INTRON
SBS	Chr10	15455819	G-T	Hetero	INTERGENIC
SBS	Chr11	3723197	C-T	Hetero	INTERGENIC
SBS	Chr11	18118902	T-A	Hetero	INTERGENIC
SBS	Chr11	22990451	A-G	Hetero	INTERGENIC
SBS	Chr12	9846992	C-T	Hetero	INTERGENIC
SBS	Chr12	12223095	G-A	Hetero	INTERGENIC
SBS	Chr12	25785585	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g213200
SBS	Chr12	26222564	A-G	Homo	INTRON
SBS	Chr12	26572811	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3906349	3906357	8
Deletion	Chr9	5226720	5226721	1
Deletion	Chr7	6837717	6837718	1
Deletion	Chr2	8469001	8483000	13999	3
Deletion	Chr12	9611428	9611429	1
Deletion	Chr11	12459798	12459799	1
Deletion	Chr7	13718001	13730000	11999
Deletion	Chr11	15461804	15461805	1
Deletion	Chr10	18564901	18564902	1
Deletion	Chr5	22035796	22035799	3
Deletion	Chr8	25574964	25574970	6
Deletion	Chr1	26693108	26693111	3
Deletion	Chr1	28464250	28464255	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	4584564	4586897
Inversion	Chr3	4584571	4586905
Inversion	Chr11	4800936	5748405
Inversion	Chr11	4800948	5748424
Inversion	Chr11	21064229	21985835	OsKitaake11g167200
Inversion	Chr11	21064231	21985857	OsKitaake11g167200
Inversion	Chr2	28013724	28689864	2
Inversion	Chr2	28013733	28689870	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes