Search Kitaake

Mutant Information

Mutant Name	FN1440-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1440-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1427978 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g017600
SBS Chr1 23033878 G-T Hetero INTERGENIC
SBS Chr1 32619697 T-G Homo INTERGENIC
SBS Chr1 37250171 A-T Homo INTERGENIC
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr2 13438780 C-G Hetero INTERGENIC
SBS Chr2 34199940 T-A Hetero INTERGENIC
SBS Chr3 5869459 A-T Hetero INTERGENIC
SBS Chr3 12828694 C-T Hetero INTRON
SBS Chr3 24293774 C-A Hetero SYNONYMOUS_CODING
SBS Chr4 18573092 G-A Homo INTERGENIC
SBS Chr4 21390092 T-C Hetero INTERGENIC
SBS Chr5 4761329 G-A Homo INTERGENIC
SBS Chr5 10289010 C-T Hetero INTERGENIC
SBS Chr5 13838643 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g107400
SBS Chr5 23732359 A-T Hetero INTERGENIC
SBS Chr5 27275420 C-T Hetero INTERGENIC
SBS Chr6 7185216 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g092700
SBS Chr7 23953218 A-G Hetero INTRON
SBS Chr8 318547 C-G Hetero INTERGENIC
SBS Chr8 1315154 A-T Homo INTERGENIC
SBS Chr8 11583799 G-A Hetero INTERGENIC
SBS Chr8 16339624 T-C Hetero INTERGENIC
SBS Chr8 28552488 C-A Hetero INTERGENIC
SBS Chr9 718966 T-A Hetero INTERGENIC
SBS Chr9 4101950 C-T Hetero INTRON
SBS Chr9 6542576 G-A Hetero INTERGENIC
SBS Chr9 15706739 C-T Homo INTERGENIC
SBS Chr10 1764090 A-T Hetero INTRON
SBS Chr10 8926588 C-T Hetero INTERGENIC
SBS Chr11 900068 C-A Hetero INTERGENIC
SBS Chr11 10697963 G-T Hetero INTERGENIC
SBS Chr11 23801034 G-A Hetero INTERGENIC
SBS Chr12 16403745 T-A Hetero UTR_3_PRIME
SBS Chr12 18009623 A-T Hetero INTERGENIC
SBS Chr12 20731372 A-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1083528 1083532 4
Deletion Chr10 1694076 1694092 16
Deletion Chr4 2595576 2595589 13
Deletion Chr3 4118001 4135000 16999 3
Deletion Chr2 4146001 4150000 3999 OsKitaake02g058400
Deletion Chr5 5591709 5591718 9 OsKitaake05g059900
Deletion Chr4 9480408 9480580 172
Deletion Chr5 12283667 12283673 6
Deletion Chr5 12515860 12515861 1
Deletion Chr12 12540962 12540963 1
Deletion Chr9 14589343 14589345 2
Deletion Chr2 20550466 20550788 322
Deletion Chr3 25919605 25919608 3
Deletion Chr4 27609805 27609812 7
Deletion Chr5 30208052 30208406 354
Deletion Chr4 30626330 30626337 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37924410 37924413 2
Insertion Chr4 26151787 26151790 2
Insertion Chr12 3161160 3161163 2
Insertion Chr12 6367992 6367994 1
Insertion Chr5 30012537 30012539 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 728227 1014841 OsKitaake08g013400
Inversion Chr8 1014843 1196520 OsKitaake08g013400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1427978	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g017600
SBS	Chr1	23033878	G-T	Hetero	INTERGENIC
SBS	Chr1	32619697	T-G	Homo	INTERGENIC
SBS	Chr1	37250171	A-T	Homo	INTERGENIC
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr2	13438780	C-G	Hetero	INTERGENIC
SBS	Chr2	34199940	T-A	Hetero	INTERGENIC
SBS	Chr3	5869459	A-T	Hetero	INTERGENIC
SBS	Chr3	12828694	C-T	Hetero	INTRON
SBS	Chr3	24293774	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	18573092	G-A	Homo	INTERGENIC
SBS	Chr4	21390092	T-C	Hetero	INTERGENIC
SBS	Chr5	4761329	G-A	Homo	INTERGENIC
SBS	Chr5	10289010	C-T	Hetero	INTERGENIC
SBS	Chr5	13838643	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g107400
SBS	Chr5	23732359	A-T	Hetero	INTERGENIC
SBS	Chr5	27275420	C-T	Hetero	INTERGENIC
SBS	Chr6	7185216	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g092700
SBS	Chr7	23953218	A-G	Hetero	INTRON
SBS	Chr8	318547	C-G	Hetero	INTERGENIC
SBS	Chr8	1315154	A-T	Homo	INTERGENIC
SBS	Chr8	11583799	G-A	Hetero	INTERGENIC
SBS	Chr8	16339624	T-C	Hetero	INTERGENIC
SBS	Chr8	28552488	C-A	Hetero	INTERGENIC
SBS	Chr9	718966	T-A	Hetero	INTERGENIC
SBS	Chr9	4101950	C-T	Hetero	INTRON
SBS	Chr9	6542576	G-A	Hetero	INTERGENIC
SBS	Chr9	15706739	C-T	Homo	INTERGENIC
SBS	Chr10	1764090	A-T	Hetero	INTRON
SBS	Chr10	8926588	C-T	Hetero	INTERGENIC
SBS	Chr11	900068	C-A	Hetero	INTERGENIC
SBS	Chr11	10697963	G-T	Hetero	INTERGENIC
SBS	Chr11	23801034	G-A	Hetero	INTERGENIC
SBS	Chr12	16403745	T-A	Hetero	UTR_3_PRIME
SBS	Chr12	18009623	A-T	Hetero	INTERGENIC
SBS	Chr12	20731372	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1083528	1083532	4
Deletion	Chr10	1694076	1694092	16
Deletion	Chr4	2595576	2595589	13
Deletion	Chr3	4118001	4135000	16999	3
Deletion	Chr2	4146001	4150000	3999	OsKitaake02g058400
Deletion	Chr5	5591709	5591718	9	OsKitaake05g059900
Deletion	Chr4	9480408	9480580	172
Deletion	Chr5	12283667	12283673	6
Deletion	Chr5	12515860	12515861	1
Deletion	Chr12	12540962	12540963	1
Deletion	Chr9	14589343	14589345	2
Deletion	Chr2	20550466	20550788	322
Deletion	Chr3	25919605	25919608	3
Deletion	Chr4	27609805	27609812	7
Deletion	Chr5	30208052	30208406	354
Deletion	Chr4	30626330	30626337	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	728227	1014841	OsKitaake08g013400
Inversion	Chr8	1014843	1196520	OsKitaake08g013400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes