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Mutant Information

Mutant Name	FN1441-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1441-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2047560 T-C Hetero INTRON
SBS Chr1 3469508 A-C Hetero INTERGENIC
SBS Chr1 3469509 C-T Hetero INTERGENIC
SBS Chr1 3994610 T-A Hetero INTERGENIC
SBS Chr1 5114267 A-C Hetero INTRON
SBS Chr1 11721931 A-T Hetero INTERGENIC
SBS Chr2 2904815 G-A Homo INTERGENIC
SBS Chr2 29604810 T-A Hetero INTERGENIC
SBS Chr2 29604811 T-A Hetero INTERGENIC
SBS Chr2 30604577 T-A Hetero INTERGENIC
SBS Chr3 12004522 G-T Hetero INTERGENIC
SBS Chr3 32586352 G-A Hetero INTERGENIC
SBS Chr4 11384459 A-C Hetero INTERGENIC
SBS Chr6 4690935 T-A Homo INTERGENIC
SBS Chr6 15186755 C-A Hetero INTERGENIC
SBS Chr6 25189071 C-T Hetero INTERGENIC
SBS Chr7 4495250 T-C Hetero INTERGENIC
SBS Chr9 11363292 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 9757125 C-T Hetero INTERGENIC
SBS Chr10 12970193 G-A Hetero INTERGENIC
SBS Chr10 19973889 G-A Hetero UTR_3_PRIME
SBS Chr11 8922666 C-A Homo INTERGENIC
SBS Chr11 15841435 T-A Homo INTRON
SBS Chr11 17780823 T-G Hetero INTERGENIC
SBS Chr12 15823933 C-T Homo INTERGENIC
SBS Chr12 16574938 A-G Homo INTERGENIC
SBS Chr12 21210052 G-A Hetero INTERGENIC
SBS Chr12 26041812 T-C Hetero INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3668849 3668853 4 OsKitaake11g050901
Deletion Chr1 4426331 4426332 1
Deletion Chr5 4558233 4558234 1
Deletion Chr6 4757861 4757870 9 OsKitaake06g064500
Deletion Chr3 6093001 6107000 13999 OsKitaake03g087400
Deletion Chr4 7548904 7548905 1
Deletion Chr2 9706001 10222000 515999 40
Deletion Chr9 11136017 11136018 1
Deletion Chr7 12148946 12148951 5
Deletion Chr7 14016589 14016592 3
Deletion Chr1 17183686 17183851 165
Deletion Chr10 17335001 17351000 15999 OsKitaake10g118500
Deletion Chr9 18967599 18967601 2
Deletion Chr12 20907858 20907859 1
Deletion Chr8 21298001 21309000 10999 OsKitaake08g159900
Deletion Chr6 21869038 21869041 3
Deletion Chr4 24459001 24474000 14999
Deletion Chr4 27663001 27674000 10999 OsKitaake04g203600

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6209644 6209647 2
Insertion Chr3 21186467 21186470 2
Insertion Chr4 33757825 33757828 2
Insertion Chr11 20051979 20051981 1
Insertion Chr12 22125892 22125895 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 17781523 18352974
Inversion Chr11 17781535 18352976

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2047560	T-C	Hetero	INTRON
SBS	Chr1	3469508	A-C	Hetero	INTERGENIC
SBS	Chr1	3469509	C-T	Hetero	INTERGENIC
SBS	Chr1	3994610	T-A	Hetero	INTERGENIC
SBS	Chr1	5114267	A-C	Hetero	INTRON
SBS	Chr1	11721931	A-T	Hetero	INTERGENIC
SBS	Chr2	2904815	G-A	Homo	INTERGENIC
SBS	Chr2	29604810	T-A	Hetero	INTERGENIC
SBS	Chr2	29604811	T-A	Hetero	INTERGENIC
SBS	Chr2	30604577	T-A	Hetero	INTERGENIC
SBS	Chr3	12004522	G-T	Hetero	INTERGENIC
SBS	Chr3	32586352	G-A	Hetero	INTERGENIC
SBS	Chr4	11384459	A-C	Hetero	INTERGENIC
SBS	Chr6	4690935	T-A	Homo	INTERGENIC
SBS	Chr6	15186755	C-A	Hetero	INTERGENIC
SBS	Chr6	25189071	C-T	Hetero	INTERGENIC
SBS	Chr7	4495250	T-C	Hetero	INTERGENIC
SBS	Chr9	11363292	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	9757125	C-T	Hetero	INTERGENIC
SBS	Chr10	12970193	G-A	Hetero	INTERGENIC
SBS	Chr10	19973889	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	8922666	C-A	Homo	INTERGENIC
SBS	Chr11	15841435	T-A	Homo	INTRON
SBS	Chr11	17780823	T-G	Hetero	INTERGENIC
SBS	Chr12	15823933	C-T	Homo	INTERGENIC
SBS	Chr12	16574938	A-G	Homo	INTERGENIC
SBS	Chr12	21210052	G-A	Hetero	INTERGENIC
SBS	Chr12	26041812	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3668849	3668853	4	OsKitaake11g050901
Deletion	Chr1	4426331	4426332	1
Deletion	Chr5	4558233	4558234	1
Deletion	Chr6	4757861	4757870	9	OsKitaake06g064500
Deletion	Chr3	6093001	6107000	13999	OsKitaake03g087400
Deletion	Chr4	7548904	7548905	1
Deletion	Chr2	9706001	10222000	515999	40
Deletion	Chr9	11136017	11136018	1
Deletion	Chr7	12148946	12148951	5
Deletion	Chr7	14016589	14016592	3
Deletion	Chr1	17183686	17183851	165
Deletion	Chr10	17335001	17351000	15999	OsKitaake10g118500
Deletion	Chr9	18967599	18967601	2
Deletion	Chr12	20907858	20907859	1
Deletion	Chr8	21298001	21309000	10999	OsKitaake08g159900
Deletion	Chr6	21869038	21869041	3
Deletion	Chr4	24459001	24474000	14999
Deletion	Chr4	27663001	27674000	10999	OsKitaake04g203600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	17781523	18352974
Inversion	Chr11	17781535	18352976

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes