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Mutant Information

Mutant Name	FN1443-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1443-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 785602 T-A Hetero INTERGENIC
SBS Chr1 22812219 G-T Hetero INTERGENIC
SBS Chr1 26311921 G-A Hetero INTERGENIC
SBS Chr1 29897391 C-T Homo INTERGENIC
SBS Chr2 9342215 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g116000
SBS Chr2 23977315 T-G Hetero INTERGENIC
SBS Chr2 27446439 C-A Hetero INTRON
SBS Chr2 30317515 T-A Hetero INTRON
SBS Chr2 34963293 C-T Hetero STOP_GAINED OsKitaake02g365000
SBS Chr3 17148807 A-G Hetero INTERGENIC
SBS Chr3 17148808 A-T Hetero INTERGENIC
SBS Chr4 20009321 G-A Homo UTR_3_PRIME
SBS Chr5 8013659 C-T Hetero INTERGENIC
SBS Chr5 12029745 C-T Hetero INTERGENIC
SBS Chr5 18665687 C-A Hetero INTERGENIC
SBS Chr5 28148135 T-G Hetero INTRON
SBS Chr6 9601676 T-A Hetero INTRON
SBS Chr6 9680681 C-A Hetero INTERGENIC
SBS Chr6 9680682 C-A Hetero INTERGENIC
SBS Chr6 13825810 A-G Hetero INTERGENIC
SBS Chr6 15464851 G-T Hetero INTERGENIC
SBS Chr6 15511866 T-C Hetero INTERGENIC
SBS Chr6 15938702 T-A Hetero INTERGENIC
SBS Chr6 17335750 G-T Hetero INTERGENIC
SBS Chr6 23358830 C-T Hetero INTERGENIC
SBS Chr7 6411869 T-C Hetero INTERGENIC
SBS Chr7 8632082 A-C Homo INTERGENIC
SBS Chr7 13435809 C-T Hetero INTERGENIC
SBS Chr7 16235377 G-C Homo INTERGENIC
SBS Chr7 26427119 G-T Hetero INTERGENIC
SBS Chr8 22581190 G-T Hetero INTERGENIC
SBS Chr8 24983551 C-G Homo INTERGENIC
SBS Chr8 27140624 C-T Hetero INTERGENIC
SBS Chr9 1518262 C-T Hetero INTERGENIC
SBS Chr9 3809391 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g020200
SBS Chr9 9999937 C-A Homo INTERGENIC
SBS Chr10 8883384 T-A Hetero INTERGENIC
SBS Chr10 17985144 A-G Homo INTERGENIC
SBS Chr10 19127652 G-A Hetero INTERGENIC
SBS Chr10 21813039 G-T Hetero INTERGENIC
SBS Chr10 21813040 C-G Hetero INTERGENIC
SBS Chr11 8039402 T-C Hetero INTERGENIC
SBS Chr11 14304648 T-C Homo INTERGENIC
SBS Chr11 29501148 C-A Hetero UTR_5_PRIME
SBS Chr12 9767713 C-A Hetero INTERGENIC
SBS Chr12 12769909 A-G Hetero INTERGENIC
SBS Chr12 24089801 G-A Hetero INTERGENIC

Deletions: 59

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 163001 186000 22999 4
Deletion Chr8 433521 433523 2
Deletion Chr6 736001 780000 43999 3
Deletion Chr4 2452001 2466000 13999
Deletion Chr5 3398001 3417000 18999 2
Deletion Chr10 3492001 3518000 25999 OsKitaake10g026400
Deletion Chr9 3706001 3731000 24999
Deletion Chr2 5088001 5106000 17999
Deletion Chr8 5538001 5551000 12999 2
Deletion Chr5 5929001 5938000 8999
Deletion Chr3 6087001 6109000 21999 2
Deletion Chr2 7136535 7136538 3
Deletion Chr5 7965001 7978000 12999 2
Deletion Chr6 8241001 8252000 10999 OsKitaake06g103700
Deletion Chr5 8633001 8658000 24999 OsKitaake05g082400
Deletion Chr9 8749001 8781000 31999 2
Deletion Chr5 9666001 9675000 8999 OsKitaake05g088700
Deletion Chr5 10406502 10406506 4
Deletion Chr2 10520242 10520249 7 OsKitaake02g124700
Deletion Chr2 11145001 11158000 12999 2
Deletion Chr2 12161001 12172000 10999 2
Deletion Chr12 12399589 12399590 1
Deletion Chr12 13008001 13018000 9999
Deletion Chr8 13234001 13259000 24999
Deletion Chr7 13363001 13372000 8999 OsKitaake07g117900
Deletion Chr3 13421001 13431000 9999 OsKitaake03g179400
Deletion Chr10 13859001 13888000 28999 2
Deletion Chr10 15193922 15193926 4
Deletion Chr1 15730001 15741000 10999 2
Deletion Chr2 16071001 16099000 27999 OsKitaake02g166300
Deletion Chr4 16565001 16576000 10999 OsKitaake04g080900
Deletion Chr8 16567001 16583000 15999 OsKitaake08g127300
Deletion Chr1 16658001 16689000 30999 3
Deletion Chr5 16783001 16806000 22999 OsKitaake05g128600
Deletion Chr6 17568001 17579000 10999 2
Deletion Chr2 17807001 17816000 8999 3
Deletion Chr4 18246001 18256000 9999 2
Deletion Chr9 19577001 19590000 12999 2
Deletion Chr4 19633001 19661000 27999 2
Deletion Chr3 19993001 20027000 33999 OsKitaake03g230101
Deletion Chr1 20686001 20702000 15999 OsKitaake01g202700
Deletion Chr2 20765001 20793000 27999 OsKitaake02g201300
Deletion Chr12 21002001 21013000 10999 2
Deletion Chr9 21312001 21323000 10999 OsKitaake09g184200
Deletion Chr12 23804001 23819000 14999 2
Deletion Chr6 24013001 24049000 35999 OsKitaake06g213000
Deletion Chr12 24383001 24400000 16999 OsKitaake12g196500
Deletion Chr11 24529001 24546000 16999 OsKitaake11g197800
Deletion Chr2 25009685 25009767 82
Deletion Chr12 25026001 25033000 6999
Deletion Chr3 25216001 25236000 19999 2
Deletion Chr2 25524001 25950000 425999 43
Deletion Chr3 28182001 28209000 26999 2
Deletion Chr4 29082001 29101000 18999 OsKitaake04g219900
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr3 31734001 31747000 12999 OsKitaake03g334600
Deletion Chr4 32810001 32840000 29999 5
Deletion Chr2 34130001 34142000 11999 OsKitaake02g354400
Deletion Chr1 44227001 44237000 9999 OsKitaake01g494300

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 7843725 7843728 2
Insertion Chr3 35237573 35237577 3
Insertion Chr6 11277380 11277383 2
Insertion Chr12 19278169 19278172 2
Insertion Chr2 33435361 33435366 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	785602	T-A	Hetero	INTERGENIC
SBS	Chr1	22812219	G-T	Hetero	INTERGENIC
SBS	Chr1	26311921	G-A	Hetero	INTERGENIC
SBS	Chr1	29897391	C-T	Homo	INTERGENIC
SBS	Chr2	9342215	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g116000
SBS	Chr2	23977315	T-G	Hetero	INTERGENIC
SBS	Chr2	27446439	C-A	Hetero	INTRON
SBS	Chr2	30317515	T-A	Hetero	INTRON
SBS	Chr2	34963293	C-T	Hetero	STOP_GAINED	OsKitaake02g365000
SBS	Chr3	17148807	A-G	Hetero	INTERGENIC
SBS	Chr3	17148808	A-T	Hetero	INTERGENIC
SBS	Chr4	20009321	G-A	Homo	UTR_3_PRIME
SBS	Chr5	8013659	C-T	Hetero	INTERGENIC
SBS	Chr5	12029745	C-T	Hetero	INTERGENIC
SBS	Chr5	18665687	C-A	Hetero	INTERGENIC
SBS	Chr5	28148135	T-G	Hetero	INTRON
SBS	Chr6	9601676	T-A	Hetero	INTRON
SBS	Chr6	9680681	C-A	Hetero	INTERGENIC
SBS	Chr6	9680682	C-A	Hetero	INTERGENIC
SBS	Chr6	13825810	A-G	Hetero	INTERGENIC
SBS	Chr6	15464851	G-T	Hetero	INTERGENIC
SBS	Chr6	15511866	T-C	Hetero	INTERGENIC
SBS	Chr6	15938702	T-A	Hetero	INTERGENIC
SBS	Chr6	17335750	G-T	Hetero	INTERGENIC
SBS	Chr6	23358830	C-T	Hetero	INTERGENIC
SBS	Chr7	6411869	T-C	Hetero	INTERGENIC
SBS	Chr7	8632082	A-C	Homo	INTERGENIC
SBS	Chr7	13435809	C-T	Hetero	INTERGENIC
SBS	Chr7	16235377	G-C	Homo	INTERGENIC
SBS	Chr7	26427119	G-T	Hetero	INTERGENIC
SBS	Chr8	22581190	G-T	Hetero	INTERGENIC
SBS	Chr8	24983551	C-G	Homo	INTERGENIC
SBS	Chr8	27140624	C-T	Hetero	INTERGENIC
SBS	Chr9	1518262	C-T	Hetero	INTERGENIC
SBS	Chr9	3809391	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g020200
SBS	Chr9	9999937	C-A	Homo	INTERGENIC
SBS	Chr10	8883384	T-A	Hetero	INTERGENIC
SBS	Chr10	17985144	A-G	Homo	INTERGENIC
SBS	Chr10	19127652	G-A	Hetero	INTERGENIC
SBS	Chr10	21813039	G-T	Hetero	INTERGENIC
SBS	Chr10	21813040	C-G	Hetero	INTERGENIC
SBS	Chr11	8039402	T-C	Hetero	INTERGENIC
SBS	Chr11	14304648	T-C	Homo	INTERGENIC
SBS	Chr11	29501148	C-A	Hetero	UTR_5_PRIME
SBS	Chr12	9767713	C-A	Hetero	INTERGENIC
SBS	Chr12	12769909	A-G	Hetero	INTERGENIC
SBS	Chr12	24089801	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	163001	186000	22999	4
Deletion	Chr8	433521	433523	2
Deletion	Chr6	736001	780000	43999	3
Deletion	Chr4	2452001	2466000	13999
Deletion	Chr5	3398001	3417000	18999	2
Deletion	Chr10	3492001	3518000	25999	OsKitaake10g026400
Deletion	Chr9	3706001	3731000	24999
Deletion	Chr2	5088001	5106000	17999
Deletion	Chr8	5538001	5551000	12999	2
Deletion	Chr5	5929001	5938000	8999
Deletion	Chr3	6087001	6109000	21999	2
Deletion	Chr2	7136535	7136538	3
Deletion	Chr5	7965001	7978000	12999	2
Deletion	Chr6	8241001	8252000	10999	OsKitaake06g103700
Deletion	Chr5	8633001	8658000	24999	OsKitaake05g082400
Deletion	Chr9	8749001	8781000	31999	2
Deletion	Chr5	9666001	9675000	8999	OsKitaake05g088700
Deletion	Chr5	10406502	10406506	4
Deletion	Chr2	10520242	10520249	7	OsKitaake02g124700
Deletion	Chr2	11145001	11158000	12999	2
Deletion	Chr2	12161001	12172000	10999	2
Deletion	Chr12	12399589	12399590	1
Deletion	Chr12	13008001	13018000	9999
Deletion	Chr8	13234001	13259000	24999
Deletion	Chr7	13363001	13372000	8999	OsKitaake07g117900
Deletion	Chr3	13421001	13431000	9999	OsKitaake03g179400
Deletion	Chr10	13859001	13888000	28999	2
Deletion	Chr10	15193922	15193926	4
Deletion	Chr1	15730001	15741000	10999	2
Deletion	Chr2	16071001	16099000	27999	OsKitaake02g166300
Deletion	Chr4	16565001	16576000	10999	OsKitaake04g080900
Deletion	Chr8	16567001	16583000	15999	OsKitaake08g127300
Deletion	Chr1	16658001	16689000	30999	3
Deletion	Chr5	16783001	16806000	22999	OsKitaake05g128600
Deletion	Chr6	17568001	17579000	10999	2
Deletion	Chr2	17807001	17816000	8999	3
Deletion	Chr4	18246001	18256000	9999	2
Deletion	Chr9	19577001	19590000	12999	2
Deletion	Chr4	19633001	19661000	27999	2
Deletion	Chr3	19993001	20027000	33999	OsKitaake03g230101
Deletion	Chr1	20686001	20702000	15999	OsKitaake01g202700
Deletion	Chr2	20765001	20793000	27999	OsKitaake02g201300
Deletion	Chr12	21002001	21013000	10999	2
Deletion	Chr9	21312001	21323000	10999	OsKitaake09g184200
Deletion	Chr12	23804001	23819000	14999	2
Deletion	Chr6	24013001	24049000	35999	OsKitaake06g213000
Deletion	Chr12	24383001	24400000	16999	OsKitaake12g196500
Deletion	Chr11	24529001	24546000	16999	OsKitaake11g197800
Deletion	Chr2	25009685	25009767	82
Deletion	Chr12	25026001	25033000	6999
Deletion	Chr3	25216001	25236000	19999	2
Deletion	Chr2	25524001	25950000	425999	43
Deletion	Chr3	28182001	28209000	26999	2
Deletion	Chr4	29082001	29101000	18999	OsKitaake04g219900
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr3	31734001	31747000	12999	OsKitaake03g334600
Deletion	Chr4	32810001	32840000	29999	5
Deletion	Chr2	34130001	34142000	11999	OsKitaake02g354400
Deletion	Chr1	44227001	44237000	9999	OsKitaake01g494300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes