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Mutant Information

Mutant Name	FN1445-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1445-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Early (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2564586 G-A Hetero INTERGENIC
SBS Chr1 6559237 T-C Homo UTR_3_PRIME
SBS Chr1 6698745 A-G Homo INTERGENIC
SBS Chr1 8014533 G-A Hetero INTRON
SBS Chr1 10536048 A-G Homo INTERGENIC
SBS Chr1 12032116 G-A Homo INTERGENIC
SBS Chr1 12695932 G-A Homo INTRON
SBS Chr1 21966438 C-G Homo INTRON
SBS Chr2 16160155 T-C Hetero INTERGENIC
SBS Chr2 16317249 G-A Hetero INTRON
SBS Chr2 16317250 C-T Hetero INTRON
SBS Chr2 16317251 C-A Hetero INTRON
SBS Chr2 16648187 G-A Hetero INTERGENIC
SBS Chr2 30957258 T-A Homo INTRON
SBS Chr3 3273114 A-T Hetero INTERGENIC
SBS Chr3 3307246 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g046900
SBS Chr4 4879854 T-A Hetero INTERGENIC
SBS Chr4 4973869 A-T Hetero INTERGENIC
SBS Chr4 10843788 C-T Hetero INTERGENIC
SBS Chr4 18082532 C-A Homo INTERGENIC
SBS Chr4 18441461 T-A Homo INTERGENIC
SBS Chr4 22736079 G-C Hetero INTERGENIC
SBS Chr5 5670704 C-T Hetero INTERGENIC
SBS Chr5 7372527 A-G Hetero INTERGENIC
SBS Chr5 15398121 G-A Hetero INTERGENIC
SBS Chr5 16311346 A-G Hetero INTERGENIC
SBS Chr5 27265856 C-T Hetero INTERGENIC
SBS Chr6 7962025 G-C Hetero INTERGENIC
SBS Chr7 4307215 T-A Homo INTERGENIC
SBS Chr7 15948587 C-T Hetero INTERGENIC
SBS Chr8 6457327 G-C Hetero INTERGENIC
SBS Chr8 18977414 C-A Hetero INTERGENIC
SBS Chr11 3527164 T-C Hetero INTERGENIC
SBS Chr11 16291806 G-T Hetero INTERGENIC
SBS Chr11 25782621 C-T Hetero INTERGENIC
SBS Chr11 27574682 G-C Hetero INTERGENIC
SBS Chr12 10602326 G-A Hetero INTERGENIC
SBS Chr12 15131799 C-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2168206 2168207 1
Deletion Chr10 4161096 4161097 1
Deletion Chr2 4257935 4257936 1
Deletion Chr2 7059513 7059517 4
Deletion Chr6 7489307 7489308 1
Deletion Chr1 14489264 14489268 4
Deletion Chr2 25288872 25288877 5
Deletion Chr3 34496188 34496189 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 34996898 34996901 2
Insertion Chr6 24846096 24846099 2
Insertion Chr7 4847507 4847510 2
Insertion Chr10 5735714 5735716 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 15610798 Chr3 24326121 OsKitaake03g260500
Translocation Chr6 15626254 Chr3 24326093 OsKitaake03g260500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2564586	G-A	Hetero	INTERGENIC
SBS	Chr1	6559237	T-C	Homo	UTR_3_PRIME
SBS	Chr1	6698745	A-G	Homo	INTERGENIC
SBS	Chr1	8014533	G-A	Hetero	INTRON
SBS	Chr1	10536048	A-G	Homo	INTERGENIC
SBS	Chr1	12032116	G-A	Homo	INTERGENIC
SBS	Chr1	12695932	G-A	Homo	INTRON
SBS	Chr1	21966438	C-G	Homo	INTRON
SBS	Chr2	16160155	T-C	Hetero	INTERGENIC
SBS	Chr2	16317249	G-A	Hetero	INTRON
SBS	Chr2	16317250	C-T	Hetero	INTRON
SBS	Chr2	16317251	C-A	Hetero	INTRON
SBS	Chr2	16648187	G-A	Hetero	INTERGENIC
SBS	Chr2	30957258	T-A	Homo	INTRON
SBS	Chr3	3273114	A-T	Hetero	INTERGENIC
SBS	Chr3	3307246	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g046900
SBS	Chr4	4879854	T-A	Hetero	INTERGENIC
SBS	Chr4	4973869	A-T	Hetero	INTERGENIC
SBS	Chr4	10843788	C-T	Hetero	INTERGENIC
SBS	Chr4	18082532	C-A	Homo	INTERGENIC
SBS	Chr4	18441461	T-A	Homo	INTERGENIC
SBS	Chr4	22736079	G-C	Hetero	INTERGENIC
SBS	Chr5	5670704	C-T	Hetero	INTERGENIC
SBS	Chr5	7372527	A-G	Hetero	INTERGENIC
SBS	Chr5	15398121	G-A	Hetero	INTERGENIC
SBS	Chr5	16311346	A-G	Hetero	INTERGENIC
SBS	Chr5	27265856	C-T	Hetero	INTERGENIC
SBS	Chr6	7962025	G-C	Hetero	INTERGENIC
SBS	Chr7	4307215	T-A	Homo	INTERGENIC
SBS	Chr7	15948587	C-T	Hetero	INTERGENIC
SBS	Chr8	6457327	G-C	Hetero	INTERGENIC
SBS	Chr8	18977414	C-A	Hetero	INTERGENIC
SBS	Chr11	3527164	T-C	Hetero	INTERGENIC
SBS	Chr11	16291806	G-T	Hetero	INTERGENIC
SBS	Chr11	25782621	C-T	Hetero	INTERGENIC
SBS	Chr11	27574682	G-C	Hetero	INTERGENIC
SBS	Chr12	10602326	G-A	Hetero	INTERGENIC
SBS	Chr12	15131799	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2168206	2168207	1
Deletion	Chr10	4161096	4161097	1
Deletion	Chr2	4257935	4257936	1
Deletion	Chr2	7059513	7059517	4
Deletion	Chr6	7489307	7489308	1
Deletion	Chr1	14489264	14489268	4
Deletion	Chr2	25288872	25288877	5
Deletion	Chr3	34496188	34496189	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	15610798	Chr3	24326121	OsKitaake03g260500
Translocation	Chr6	15626254	Chr3	24326093	OsKitaake03g260500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes