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Mutant Information

Mutant Name	FN1448-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1448-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26328998 C-A Hetero INTERGENIC
SBS Chr1 26353032 C-A Hetero INTERGENIC
SBS Chr1 27624739 C-T Hetero INTERGENIC
SBS Chr1 32602234 G-T Hetero INTERGENIC
SBS Chr1 33272316 A-G Hetero INTERGENIC
SBS Chr2 18754368 A-G Hetero INTERGENIC
SBS Chr2 31341946 G-A Hetero INTERGENIC
SBS Chr2 31555580 C-T Hetero INTERGENIC
SBS Chr3 17850295 G-A Hetero INTERGENIC
SBS Chr3 17968680 A-G Hetero INTERGENIC
SBS Chr3 19117119 G-A Hetero INTERGENIC
SBS Chr3 24357804 C-G Hetero INTERGENIC
SBS Chr3 25254841 C-A Hetero INTERGENIC
SBS Chr4 9653883 C-T Hetero INTERGENIC
SBS Chr4 21409098 G-T Homo INTRON
SBS Chr4 22166727 G-A Homo INTERGENIC
SBS Chr4 35983343 T-G Homo INTERGENIC
SBS Chr5 19863759 A-T Hetero INTERGENIC
SBS Chr6 20862943 T-A Hetero UTR_5_PRIME
SBS Chr6 26021482 C-T Hetero INTERGENIC
SBS Chr6 26154456 C-T Hetero INTERGENIC
SBS Chr6 29628396 C-A Hetero SYNONYMOUS_CODING
SBS Chr7 3480798 G-A Hetero INTRON
SBS Chr7 8361122 C-T Homo INTERGENIC
SBS Chr7 11890433 G-T Homo INTRON
SBS Chr7 19324801 T-G Hetero INTERGENIC
SBS Chr7 22700948 G-A Homo UTR_3_PRIME
SBS Chr7 28661771 G-A Homo SYNONYMOUS_CODING
SBS Chr8 2538529 T-A Homo INTERGENIC
SBS Chr8 7389766 C-G Hetero INTERGENIC
SBS Chr8 8780912 A-T Homo INTERGENIC
SBS Chr8 18560198 G-A Hetero INTERGENIC
SBS Chr8 19149847 G-A Hetero INTERGENIC
SBS Chr8 20413750 C-T Homo INTERGENIC
SBS Chr8 22964531 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 4001072 C-T Homo INTERGENIC
SBS Chr9 5375271 A-G Hetero INTERGENIC
SBS Chr9 5736599 C-T Homo INTERGENIC
SBS Chr9 7550270 G-T Hetero INTERGENIC
SBS Chr9 7550282 C-T Hetero INTERGENIC
SBS Chr9 15919939 T-A Hetero INTERGENIC
SBS Chr10 1657338 G-A Hetero INTERGENIC
SBS Chr10 11587334 G-A Hetero STOP_GAINED OsKitaake10g069000
SBS Chr10 12528327 C-T Hetero INTERGENIC
SBS Chr10 14356855 G-A Hetero INTERGENIC
SBS Chr10 18205675 A-T Hetero INTERGENIC
SBS Chr11 6772364 G-A Homo INTERGENIC
SBS Chr11 8337835 T-C Homo INTERGENIC
SBS Chr11 8620011 C-T Hetero INTERGENIC
SBS Chr11 10229952 C-A Hetero INTERGENIC
SBS Chr11 15112316 C-T Hetero INTERGENIC
SBS Chr11 19396415 A-T Hetero INTERGENIC
SBS Chr11 23264544 G-T Homo INTERGENIC
SBS Chr12 16645364 T-C Homo INTERGENIC
SBS Chr12 23061456 T-C Hetero INTRON
SBS Chr12 24975599 T-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 751300 751306 6 OsKitaake02g010500
Deletion Chr12 3109001 3123000 13999 2
Deletion Chr5 4449549 4449559 10
Deletion Chr12 4556756 4556759 3
Deletion Chr7 6202370 6202376 6
Deletion Chr3 6938364 6938366 2
Deletion Chr1 7530019 7530027 8
Deletion Chr11 10702016 10702018 2
Deletion Chr10 13865803 13865805 2 OsKitaake10g084800
Deletion Chr8 13924848 13924849 1
Deletion Chr6 30822368 30822370 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 34270670 34538999 OsKitaake01g362000
Inversion Chr1 34270677 34539084 OsKitaake01g362000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26328998	C-A	Hetero	INTERGENIC
SBS	Chr1	26353032	C-A	Hetero	INTERGENIC
SBS	Chr1	27624739	C-T	Hetero	INTERGENIC
SBS	Chr1	32602234	G-T	Hetero	INTERGENIC
SBS	Chr1	33272316	A-G	Hetero	INTERGENIC
SBS	Chr2	18754368	A-G	Hetero	INTERGENIC
SBS	Chr2	31341946	G-A	Hetero	INTERGENIC
SBS	Chr2	31555580	C-T	Hetero	INTERGENIC
SBS	Chr3	17850295	G-A	Hetero	INTERGENIC
SBS	Chr3	17968680	A-G	Hetero	INTERGENIC
SBS	Chr3	19117119	G-A	Hetero	INTERGENIC
SBS	Chr3	24357804	C-G	Hetero	INTERGENIC
SBS	Chr3	25254841	C-A	Hetero	INTERGENIC
SBS	Chr4	9653883	C-T	Hetero	INTERGENIC
SBS	Chr4	21409098	G-T	Homo	INTRON
SBS	Chr4	22166727	G-A	Homo	INTERGENIC
SBS	Chr4	35983343	T-G	Homo	INTERGENIC
SBS	Chr5	19863759	A-T	Hetero	INTERGENIC
SBS	Chr6	20862943	T-A	Hetero	UTR_5_PRIME
SBS	Chr6	26021482	C-T	Hetero	INTERGENIC
SBS	Chr6	26154456	C-T	Hetero	INTERGENIC
SBS	Chr6	29628396	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	3480798	G-A	Hetero	INTRON
SBS	Chr7	8361122	C-T	Homo	INTERGENIC
SBS	Chr7	11890433	G-T	Homo	INTRON
SBS	Chr7	19324801	T-G	Hetero	INTERGENIC
SBS	Chr7	22700948	G-A	Homo	UTR_3_PRIME
SBS	Chr7	28661771	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr8	2538529	T-A	Homo	INTERGENIC
SBS	Chr8	7389766	C-G	Hetero	INTERGENIC
SBS	Chr8	8780912	A-T	Homo	INTERGENIC
SBS	Chr8	18560198	G-A	Hetero	INTERGENIC
SBS	Chr8	19149847	G-A	Hetero	INTERGENIC
SBS	Chr8	20413750	C-T	Homo	INTERGENIC
SBS	Chr8	22964531	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	4001072	C-T	Homo	INTERGENIC
SBS	Chr9	5375271	A-G	Hetero	INTERGENIC
SBS	Chr9	5736599	C-T	Homo	INTERGENIC
SBS	Chr9	7550270	G-T	Hetero	INTERGENIC
SBS	Chr9	7550282	C-T	Hetero	INTERGENIC
SBS	Chr9	15919939	T-A	Hetero	INTERGENIC
SBS	Chr10	1657338	G-A	Hetero	INTERGENIC
SBS	Chr10	11587334	G-A	Hetero	STOP_GAINED	OsKitaake10g069000
SBS	Chr10	12528327	C-T	Hetero	INTERGENIC
SBS	Chr10	14356855	G-A	Hetero	INTERGENIC
SBS	Chr10	18205675	A-T	Hetero	INTERGENIC
SBS	Chr11	6772364	G-A	Homo	INTERGENIC
SBS	Chr11	8337835	T-C	Homo	INTERGENIC
SBS	Chr11	8620011	C-T	Hetero	INTERGENIC
SBS	Chr11	10229952	C-A	Hetero	INTERGENIC
SBS	Chr11	15112316	C-T	Hetero	INTERGENIC
SBS	Chr11	19396415	A-T	Hetero	INTERGENIC
SBS	Chr11	23264544	G-T	Homo	INTERGENIC
SBS	Chr12	16645364	T-C	Homo	INTERGENIC
SBS	Chr12	23061456	T-C	Hetero	INTRON
SBS	Chr12	24975599	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	751300	751306	6	OsKitaake02g010500
Deletion	Chr12	3109001	3123000	13999	2
Deletion	Chr5	4449549	4449559	10
Deletion	Chr12	4556756	4556759	3
Deletion	Chr7	6202370	6202376	6
Deletion	Chr3	6938364	6938366	2
Deletion	Chr1	7530019	7530027	8
Deletion	Chr11	10702016	10702018	2
Deletion	Chr10	13865803	13865805	2	OsKitaake10g084800
Deletion	Chr8	13924848	13924849	1
Deletion	Chr6	30822368	30822370	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	34270670	34538999	OsKitaake01g362000
Inversion	Chr1	34270677	34539084	OsKitaake01g362000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes