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Mutant Information

Mutant Name	FN1450-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1450-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32383309 T-G Hetero INTRON
SBS Chr2 16268613 A-C Homo INTERGENIC
SBS Chr2 20731868 A-G Hetero INTERGENIC
SBS Chr2 21710744 C-A Hetero INTERGENIC
SBS Chr2 21750305 G-A Hetero INTERGENIC
SBS Chr3 4906598 A-G Hetero UTR_3_PRIME
SBS Chr4 21388630 C-T Hetero INTERGENIC
SBS Chr4 28052844 C-T Hetero INTERGENIC
SBS Chr5 8751546 G-T Homo INTERGENIC
SBS Chr5 9005651 G-A Hetero INTERGENIC
SBS Chr5 26456099 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g234500
SBS Chr8 4363791 T-A Hetero INTERGENIC
SBS Chr8 4363792 C-A Hetero INTERGENIC
SBS Chr8 5257743 G-A Hetero INTERGENIC
SBS Chr8 14278107 C-T Hetero INTERGENIC
SBS Chr8 24266575 A-C Homo INTERGENIC
SBS Chr10 1720103 A-G Hetero INTERGENIC
SBS Chr10 3248946 C-T Hetero INTERGENIC
SBS Chr10 19053555 G-A Hetero INTERGENIC
SBS Chr11 14236671 C-T Hetero INTERGENIC
SBS Chr12 13437173 A-T Hetero INTRON
SBS Chr12 19031064 T-A Hetero INTRON

Deletions: 242

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 242959 242964 5
Deletion Chr5 308001 321000 12999 3
Deletion Chr1 371001 382000 10999 OsKitaake01g005200
Deletion Chr6 415001 423000 7999 2
Deletion Chr5 570001 605000 34999 4
Deletion Chr2 594001 610000 15999 OsKitaake02g009000
Deletion Chr8 918001 939000 20999 OsKitaake08g012200
Deletion Chr10 964001 972000 7999
Deletion Chr3 1081001 1105000 23999 OsKitaake03g016901
Deletion Chr5 1122001 1133000 10999 OsKitaake05g014200
Deletion Chr11 1286336 1286343 7
Deletion Chr5 1444001 1452000 7999 2
Deletion Chr9 1597001 1617000 19999 OsKitaake09g009200
Deletion Chr7 1657001 1667000 9999 3
Deletion Chr11 1659001 1676000 16999 4
Deletion Chr3 1673001 1688000 14999 OsKitaake03g023750
Deletion Chr5 1692001 1706000 13999 3
Deletion Chr2 1705001 1738000 32999 4
Deletion Chr12 1736001 1749000 12999 4
Deletion Chr7 1787001 1802000 14999
Deletion Chr2 2103001 2117000 13999 2
Deletion Chr10 2205001 2226000 20999 3
Deletion Chr4 2450001 2467000 16999
Deletion Chr9 2586001 2599000 12999 OsKitaake09g014300
Deletion Chr12 2777001 2794000 16999 5
Deletion Chr11 2872001 2883000 10999 3
Deletion Chr7 3167001 3181000 13999 2
Deletion Chr3 3326001 3352000 25999 2
Deletion Chr4 3361001 3374000 12999
Deletion Chr5 3395001 3420000 24999 3
Deletion Chr2 3437001 3459000 21999 OsKitaake02g050200
Deletion Chr9 3502001 3512000 9999 OsKitaake09g018000
Deletion Chr6 3528557 3528567 10
Deletion Chr10 3554001 3567000 12999 OsKitaake10g026601
Deletion Chr5 3715001 3726000 10999
Deletion Chr9 3717001 3735000 17999
Deletion Chr11 3755001 3770000 14999 OsKitaake11g052400
Deletion Chr9 3928001 3944000 15999 OsKitaake09g020900
Deletion Chr7 3948001 3964000 15999 OsKitaake07g050300
Deletion Chr3 4180025 4180032 7
Deletion Chr3 4450001 4461000 10999 OsKitaake03g063900
Deletion Chr7 4461001 4474000 12999 2
Deletion Chr1 4468001 4483000 14999 OsKitaake01g059500
Deletion Chr8 4528001 4544000 15999 OsKitaake08g051100
Deletion Chr7 4738001 4754000 15999
Deletion Chr4 4957001 4974000 16999 OsKitaake04g022400
Deletion Chr8 5419001 5444000 24999 4
Deletion Chr9 5733001 5746000 12999 OsKitaake09g032700
Deletion Chr12 5786001 5802000 15999 2
Deletion Chr5 5927001 5942000 14999
Deletion Chr4 5940709 5940710 1
Deletion Chr3 6078001 6106000 27999 3
Deletion Chr6 6143001 6154000 10999 OsKitaake06g080800
Deletion Chr5 6194001 6210000 15999 OsKitaake05g064100
Deletion Chr2 6207001 6223000 15999 2
Deletion Chr7 6219001 6233000 13999 2
Deletion Chr4 6315001 6338000 22999 OsKitaake04g031700
Deletion Chr5 6423001 6434000 10999
Deletion Chr4 6731001 6745000 13999
Deletion Chr9 6939001 6950000 10999 OsKitaake09g039700
Deletion Chr6 6986001 7004000 17999 OsKitaake06g090500
Deletion Chr5 7011001 7024000 12999 OsKitaake05g070500
Deletion Chr12 7048001 7056000 7999 OsKitaake12g079300
Deletion Chr2 7435001 7459000 23999 2
Deletion Chr7 7545001 7558000 12999
Deletion Chr9 7831001 7848000 16999 3
Deletion Chr9 7981001 7991000 9999 OsKitaake09g045100
Deletion Chr5 8162001 8175000 12999
Deletion Chr6 8234001 8257000 22999 2
Deletion Chr10 8301119 8301120 1
Deletion Chr2 8384001 8401000 16999 OsKitaake02g106600
Deletion Chr6 8517001 8527000 9999 2
Deletion Chr5 8627001 8659000 31999 OsKitaake05g082400
Deletion Chr4 8641001 8660000 18999 2
Deletion Chr3 8705001 8721000 15999 OsKitaake03g119200
Deletion Chr4 8934001 8950000 15999 OsKitaake04g046100
Deletion Chr2 9031001 9051000 19999
Deletion Chr2 9330001 9342000 11999 OsKitaake02g116000
Deletion Chr1 9374001 9387000 12999 OsKitaake01g120200
Deletion Chr3 9430426 9430430 4
Deletion Chr11 9462001 9478000 15999 3
Deletion Chr3 9655001 9666000 10999
Deletion Chr6 10076001 10090000 13999 OsKitaake06g115900
Deletion Chr4 10196001 10219000 22999
Deletion Chr1 10386001 10403000 16999 2
Deletion Chr12 10441001 10454000 12999 3
Deletion Chr12 10485001 10495000 9999
Deletion Chr2 10502001 10534000 31999 3
Deletion Chr4 10509001 10532000 22999 OsKitaake04g055600
Deletion Chr7 10729001 10746000 16999 3
Deletion Chr12 10835001 10849000 13999 OsKitaake12g100400
Deletion Chr6 10918001 10926000 7999 OsKitaake06g121600
Deletion Chr2 11146001 11159000 12999 2
Deletion Chr11 11381001 11393000 11999
Deletion Chr8 11426001 11495000 68999 3
Deletion Chr12 11444001 11461000 16999
Deletion Chr2 11540001 11552000 11999
Deletion Chr10 11609001 11621000 11999 OsKitaake10g069200
Deletion Chr12 11660188 11660189 1
Deletion Chr12 11707981 11708144 163
Deletion Chr2 11743001 11755000 11999
Deletion Chr7 12014001 12036000 21999
Deletion Chr7 12021026 12021028 2
Deletion Chr2 12160001 12173000 12999 2
Deletion Chr6 12297001 12309000 11999 2
Deletion Chr5 12511001 12524000 12999
Deletion Chr5 12526001 12565000 38999
Deletion Chr11 12531001 12539000 7999
Deletion Chr2 12746001 12763000 16999 4
Deletion Chr5 13042001 13050000 7999 OsKitaake05g101400
Deletion Chr8 13208001 13259000 50999
Deletion Chr12 13359001 13372000 12999 OsKitaake12g111100
Deletion Chr9 13363001 13382000 18999 2
Deletion Chr3 13421001 13432000 10999 OsKitaake03g179400
Deletion Chr1 13458001 13470000 11999 2
Deletion Chr2 13480001 13489000 8999 2
Deletion Chr1 13828773 13828793 20
Deletion Chr8 13876001 13885000 8999
Deletion Chr9 14136001 14169000 32999 2
Deletion Chr9 14234001 14250000 15999 OsKitaake09g095800
Deletion Chr1 14673001 14698000 24999 OsKitaake01g166200
Deletion Chr7 14686302 14686306 4
Deletion Chr2 14788001 14802000 13999
Deletion Chr2 14826001 14845000 18999
Deletion Chr11 14937693 14937699 6
Deletion Chr9 14987001 15005000 17999
Deletion Chr11 15059641 15059642 1
Deletion Chr10 15184001 15197000 12999 3
Deletion Chr2 15271001 15282000 10999 3
Deletion Chr2 15366001 15380000 13999
Deletion Chr7 15604001 15619000 14999 OsKitaake07g129700
Deletion Chr1 15728001 15742000 13999 2
Deletion Chr2 16069001 16116000 46999 OsKitaake02g166300
Deletion Chr2 16234381 16234384 3 OsKitaake02g166900
Deletion Chr2 16346001 16359000 12999 OsKitaake02g167800
Deletion Chr3 16388001 16399000 10999 OsKitaake03g207900
Deletion Chr8 16561001 16580000 18999 4
Deletion Chr11 16708001 16722000 13999 OsKitaake11g132300
Deletion Chr3 16710001 16723000 12999 OsKitaake03g210400
Deletion Chr3 16860768 16860773 5
Deletion Chr11 16960784 16960787 3
Deletion Chr9 16967001 16985000 17999 OsKitaake09g125800
Deletion Chr6 16971001 16983000 11999 OsKitaake06g159500
Deletion Chr1 17055001 17089000 33999
Deletion Chr5 17064001 17090000 25999 OsKitaake05g131400
Deletion Chr6 17191001 17204000 12999 OsKitaake06g160700
Deletion Chr1 17263001 17275000 11999
Deletion Chr4 17408001 17425000 16999 4
Deletion Chr10 17476001 17504000 27999 OsKitaake10g119300
Deletion Chr2 17537001 17561000 23999 OsKitaake02g176100
Deletion Chr1 17542001 17554000 11999
Deletion Chr6 17568001 17581000 12999 2
Deletion Chr9 17753001 17766000 12999 OsKitaake09g134600
Deletion Chr2 17806001 17817000 10999 3
Deletion Chr8 17956001 17968000 11999 OsKitaake08g133600
Deletion Chr4 18037001 18053000 15999 3
Deletion Chr4 18245001 18258000 12999 2
Deletion Chr6 18352001 18382000 29999 OsKitaake06g168100
Deletion Chr11 18618001 18629000 10999 2
Deletion Chr2 18693001 18711000 17999 2
Deletion Chr5 18943001 18958000 14999 OsKitaake05g148200
Deletion Chr1 18955001 18967000 11999 2
Deletion Chr5 19092001 19108000 15999 2
Deletion Chr7 19216001 19226000 9999 2
Deletion Chr12 19269001 19283000 13999 OsKitaake12g144200
Deletion Chr9 19527001 19540000 12999 3
Deletion Chr4 19639001 19666000 26999 2
Deletion Chr1 19671001 19686000 14999 OsKitaake01g196000
Deletion Chr6 19735131 19735499 368
Deletion Chr3 19997001 20022000 24999 OsKitaake03g230101
Deletion Chr4 20053001 20060000 6999 OsKitaake04g105500
Deletion Chr3 20269001 20291000 21999
Deletion Chr12 20657001 20669000 11999 2
Deletion Chr1 20683001 20703000 19999 OsKitaake01g202700
Deletion Chr6 20696001 20708000 11999 2
Deletion Chr6 20849001 20972000 122999 8
Deletion Chr7 21009817 21009823 6
Deletion Chr9 21307001 21329000 21999 2
Deletion Chr2 21318001 21331000 12999 OsKitaake02g205600
Deletion Chr6 21346001 21359000 12999
Deletion Chr1 21554001 21576000 21999
Deletion Chr2 21560001 21573000 12999 3
Deletion Chr11 21852001 21868000 15999 OsKitaake11g172700
Deletion Chr4 21863001 21877000 13999 4
Deletion Chr3 22311001 22323000 11999 OsKitaake03g242600
Deletion Chr8 22312605 22312609 4
Deletion Chr8 22402555 22402561 6
Deletion Chr4 22740001 22757000 16999 6
Deletion Chr12 22785001 22803000 17999 3
Deletion Chr2 23245703 23245710 7
Deletion Chr1 23255001 23270000 14999 OsKitaake01g222400
Deletion Chr12 23445001 23459000 13999 OsKitaake12g187800
Deletion Chr10 23834001 23912000 77999 19
Deletion Chr3 24055001 24076000 20999 OsKitaake03g257300
Deletion Chr12 24379001 24402000 22999 3
Deletion Chr12 24477001 24491000 13999 2
Deletion Chr11 24525001 24545000 19999 OsKitaake11g197800
Deletion Chr8 24971001 24989000 17999 OsKitaake08g194166
Deletion Chr12 25094001 25107000 12999 OsKitaake12g203400
Deletion Chr3 25213001 25236000 22999 2
Deletion Chr6 25258001 25273000 14999 OsKitaake06g223800
Deletion Chr4 25350944 25350946 2 OsKitaake04g173000
Deletion Chr7 26292001 26307000 14999 2
Deletion Chr6 26351001 26365000 13999
Deletion Chr1 26444059 26444063 4
Deletion Chr11 26581001 26595000 13999 2
Deletion Chr8 26627606 26627612 6
Deletion Chr7 26845001 26869000 23999 OsKitaake07g250200
Deletion Chr12 26879001 26890000 10999 2
Deletion Chr2 27604001 27619000 14999 OsKitaake02g277500
Deletion Chr2 27673001 27687000 13999 OsKitaake02g278000
Deletion Chr2 27694001 27708000 13999 OsKitaake02g278100
Deletion Chr5 27745001 27757000 11999 2
Deletion Chr6 27775001 27790000 14999
Deletion Chr4 27988920 27988929 9
Deletion Chr2 28104118 28104120 2
Deletion Chr3 28184001 28204000 19999 OsKitaake03g291400
Deletion Chr6 28338001 28352000 13999
Deletion Chr3 28590001 28608000 17999 2
Deletion Chr3 28652001 28669000 16999
Deletion Chr4 29079001 29100000 20999 4
Deletion Chr1 29484001 29499000 14999 OsKitaake01g289000
Deletion Chr4 29517001 29535000 17999 OsKitaake04g226500
Deletion Chr3 29788001 29798000 9999 OsKitaake03g311500
Deletion Chr3 30354001 30370000 15999 OsKitaake03g318500
Deletion Chr3 30871001 30884000 12999 2
Deletion Chr3 31016001 31024000 7999 OsKitaake03g325700
Deletion Chr1 31482133 31482211 78 OsKitaake01g316000
Deletion Chr2 31614001 31629000 14999 OsKitaake02g321880
Deletion Chr2 32162001 32188000 25999 2
Deletion Chr4 32812001 32839000 26999 4
Deletion Chr1 33452001 33475000 22999 OsKitaake01g342500
Deletion Chr1 33739001 33751000 11999 OsKitaake01g346400
Deletion Chr4 34835001 34846000 10999 OsKitaake04g291550
Deletion Chr1 35776001 35788000 11999 3
Deletion Chr4 35859001 35875000 15999 OsKitaake04g307300
Deletion Chr2 36255001 36267000 11999 2
Deletion Chr2 36363001 36377000 13999 OsKitaake02g385300
Deletion Chr3 37706001 37721000 14999 OsKitaake03g423700
Deletion Chr1 41461001 41481000 19999
Deletion Chr1 43008001 43031000 22999 2
Deletion Chr1 44227001 44235000 7999 OsKitaake01g494300

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 34418360 34418363 2
Insertion Chr7 5656390 5656393 2
Insertion Chr3 20042400 20042402 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 22880027 23381164 OsKitaake02g222700
Inversion Chr2 22880070 23130496 2
Inversion Chr5 24278706 24465956
Inversion Chr5 24278715 24465970

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8653903 Chr1 17221950 OsKitaake10g053166
Translocation Chr5 26622308 Chr4 5136129 2
Translocation Chr11 29502619 Chr4 5134182 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32383309	T-G	Hetero	INTRON
SBS	Chr2	16268613	A-C	Homo	INTERGENIC
SBS	Chr2	20731868	A-G	Hetero	INTERGENIC
SBS	Chr2	21710744	C-A	Hetero	INTERGENIC
SBS	Chr2	21750305	G-A	Hetero	INTERGENIC
SBS	Chr3	4906598	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	21388630	C-T	Hetero	INTERGENIC
SBS	Chr4	28052844	C-T	Hetero	INTERGENIC
SBS	Chr5	8751546	G-T	Homo	INTERGENIC
SBS	Chr5	9005651	G-A	Hetero	INTERGENIC
SBS	Chr5	26456099	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g234500
SBS	Chr8	4363791	T-A	Hetero	INTERGENIC
SBS	Chr8	4363792	C-A	Hetero	INTERGENIC
SBS	Chr8	5257743	G-A	Hetero	INTERGENIC
SBS	Chr8	14278107	C-T	Hetero	INTERGENIC
SBS	Chr8	24266575	A-C	Homo	INTERGENIC
SBS	Chr10	1720103	A-G	Hetero	INTERGENIC
SBS	Chr10	3248946	C-T	Hetero	INTERGENIC
SBS	Chr10	19053555	G-A	Hetero	INTERGENIC
SBS	Chr11	14236671	C-T	Hetero	INTERGENIC
SBS	Chr12	13437173	A-T	Hetero	INTRON
SBS	Chr12	19031064	T-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	242959	242964	5
Deletion	Chr5	308001	321000	12999	3
Deletion	Chr1	371001	382000	10999	OsKitaake01g005200
Deletion	Chr6	415001	423000	7999	2
Deletion	Chr5	570001	605000	34999	4
Deletion	Chr2	594001	610000	15999	OsKitaake02g009000
Deletion	Chr8	918001	939000	20999	OsKitaake08g012200
Deletion	Chr10	964001	972000	7999
Deletion	Chr3	1081001	1105000	23999	OsKitaake03g016901
Deletion	Chr5	1122001	1133000	10999	OsKitaake05g014200
Deletion	Chr11	1286336	1286343	7
Deletion	Chr5	1444001	1452000	7999	2
Deletion	Chr9	1597001	1617000	19999	OsKitaake09g009200
Deletion	Chr7	1657001	1667000	9999	3
Deletion	Chr11	1659001	1676000	16999	4
Deletion	Chr3	1673001	1688000	14999	OsKitaake03g023750
Deletion	Chr5	1692001	1706000	13999	3
Deletion	Chr2	1705001	1738000	32999	4
Deletion	Chr12	1736001	1749000	12999	4
Deletion	Chr7	1787001	1802000	14999
Deletion	Chr2	2103001	2117000	13999	2
Deletion	Chr10	2205001	2226000	20999	3
Deletion	Chr4	2450001	2467000	16999
Deletion	Chr9	2586001	2599000	12999	OsKitaake09g014300
Deletion	Chr12	2777001	2794000	16999	5
Deletion	Chr11	2872001	2883000	10999	3
Deletion	Chr7	3167001	3181000	13999	2
Deletion	Chr3	3326001	3352000	25999	2
Deletion	Chr4	3361001	3374000	12999
Deletion	Chr5	3395001	3420000	24999	3
Deletion	Chr2	3437001	3459000	21999	OsKitaake02g050200
Deletion	Chr9	3502001	3512000	9999	OsKitaake09g018000
Deletion	Chr6	3528557	3528567	10
Deletion	Chr10	3554001	3567000	12999	OsKitaake10g026601
Deletion	Chr5	3715001	3726000	10999
Deletion	Chr9	3717001	3735000	17999
Deletion	Chr11	3755001	3770000	14999	OsKitaake11g052400
Deletion	Chr9	3928001	3944000	15999	OsKitaake09g020900
Deletion	Chr7	3948001	3964000	15999	OsKitaake07g050300
Deletion	Chr3	4180025	4180032	7
Deletion	Chr3	4450001	4461000	10999	OsKitaake03g063900
Deletion	Chr7	4461001	4474000	12999	2
Deletion	Chr1	4468001	4483000	14999	OsKitaake01g059500
Deletion	Chr8	4528001	4544000	15999	OsKitaake08g051100
Deletion	Chr7	4738001	4754000	15999
Deletion	Chr4	4957001	4974000	16999	OsKitaake04g022400
Deletion	Chr8	5419001	5444000	24999	4
Deletion	Chr9	5733001	5746000	12999	OsKitaake09g032700
Deletion	Chr12	5786001	5802000	15999	2
Deletion	Chr5	5927001	5942000	14999
Deletion	Chr4	5940709	5940710	1
Deletion	Chr3	6078001	6106000	27999	3
Deletion	Chr6	6143001	6154000	10999	OsKitaake06g080800
Deletion	Chr5	6194001	6210000	15999	OsKitaake05g064100
Deletion	Chr2	6207001	6223000	15999	2
Deletion	Chr7	6219001	6233000	13999	2
Deletion	Chr4	6315001	6338000	22999	OsKitaake04g031700
Deletion	Chr5	6423001	6434000	10999
Deletion	Chr4	6731001	6745000	13999
Deletion	Chr9	6939001	6950000	10999	OsKitaake09g039700
Deletion	Chr6	6986001	7004000	17999	OsKitaake06g090500
Deletion	Chr5	7011001	7024000	12999	OsKitaake05g070500
Deletion	Chr12	7048001	7056000	7999	OsKitaake12g079300
Deletion	Chr2	7435001	7459000	23999	2
Deletion	Chr7	7545001	7558000	12999
Deletion	Chr9	7831001	7848000	16999	3
Deletion	Chr9	7981001	7991000	9999	OsKitaake09g045100
Deletion	Chr5	8162001	8175000	12999
Deletion	Chr6	8234001	8257000	22999	2
Deletion	Chr10	8301119	8301120	1
Deletion	Chr2	8384001	8401000	16999	OsKitaake02g106600
Deletion	Chr6	8517001	8527000	9999	2
Deletion	Chr5	8627001	8659000	31999	OsKitaake05g082400
Deletion	Chr4	8641001	8660000	18999	2
Deletion	Chr3	8705001	8721000	15999	OsKitaake03g119200
Deletion	Chr4	8934001	8950000	15999	OsKitaake04g046100
Deletion	Chr2	9031001	9051000	19999
Deletion	Chr2	9330001	9342000	11999	OsKitaake02g116000
Deletion	Chr1	9374001	9387000	12999	OsKitaake01g120200
Deletion	Chr3	9430426	9430430	4
Deletion	Chr11	9462001	9478000	15999	3
Deletion	Chr3	9655001	9666000	10999
Deletion	Chr6	10076001	10090000	13999	OsKitaake06g115900
Deletion	Chr4	10196001	10219000	22999
Deletion	Chr1	10386001	10403000	16999	2
Deletion	Chr12	10441001	10454000	12999	3
Deletion	Chr12	10485001	10495000	9999
Deletion	Chr2	10502001	10534000	31999	3
Deletion	Chr4	10509001	10532000	22999	OsKitaake04g055600
Deletion	Chr7	10729001	10746000	16999	3
Deletion	Chr12	10835001	10849000	13999	OsKitaake12g100400
Deletion	Chr6	10918001	10926000	7999	OsKitaake06g121600
Deletion	Chr2	11146001	11159000	12999	2
Deletion	Chr11	11381001	11393000	11999
Deletion	Chr8	11426001	11495000	68999	3
Deletion	Chr12	11444001	11461000	16999
Deletion	Chr2	11540001	11552000	11999
Deletion	Chr10	11609001	11621000	11999	OsKitaake10g069200
Deletion	Chr12	11660188	11660189	1
Deletion	Chr12	11707981	11708144	163
Deletion	Chr2	11743001	11755000	11999
Deletion	Chr7	12014001	12036000	21999
Deletion	Chr7	12021026	12021028	2
Deletion	Chr2	12160001	12173000	12999	2
Deletion	Chr6	12297001	12309000	11999	2
Deletion	Chr5	12511001	12524000	12999
Deletion	Chr5	12526001	12565000	38999
Deletion	Chr11	12531001	12539000	7999
Deletion	Chr2	12746001	12763000	16999	4
Deletion	Chr5	13042001	13050000	7999	OsKitaake05g101400
Deletion	Chr8	13208001	13259000	50999
Deletion	Chr12	13359001	13372000	12999	OsKitaake12g111100
Deletion	Chr9	13363001	13382000	18999	2
Deletion	Chr3	13421001	13432000	10999	OsKitaake03g179400
Deletion	Chr1	13458001	13470000	11999	2
Deletion	Chr2	13480001	13489000	8999	2
Deletion	Chr1	13828773	13828793	20
Deletion	Chr8	13876001	13885000	8999
Deletion	Chr9	14136001	14169000	32999	2
Deletion	Chr9	14234001	14250000	15999	OsKitaake09g095800
Deletion	Chr1	14673001	14698000	24999	OsKitaake01g166200
Deletion	Chr7	14686302	14686306	4
Deletion	Chr2	14788001	14802000	13999
Deletion	Chr2	14826001	14845000	18999
Deletion	Chr11	14937693	14937699	6
Deletion	Chr9	14987001	15005000	17999
Deletion	Chr11	15059641	15059642	1
Deletion	Chr10	15184001	15197000	12999	3
Deletion	Chr2	15271001	15282000	10999	3
Deletion	Chr2	15366001	15380000	13999
Deletion	Chr7	15604001	15619000	14999	OsKitaake07g129700
Deletion	Chr1	15728001	15742000	13999	2
Deletion	Chr2	16069001	16116000	46999	OsKitaake02g166300
Deletion	Chr2	16234381	16234384	3	OsKitaake02g166900
Deletion	Chr2	16346001	16359000	12999	OsKitaake02g167800
Deletion	Chr3	16388001	16399000	10999	OsKitaake03g207900
Deletion	Chr8	16561001	16580000	18999	4
Deletion	Chr11	16708001	16722000	13999	OsKitaake11g132300
Deletion	Chr3	16710001	16723000	12999	OsKitaake03g210400
Deletion	Chr3	16860768	16860773	5
Deletion	Chr11	16960784	16960787	3
Deletion	Chr9	16967001	16985000	17999	OsKitaake09g125800
Deletion	Chr6	16971001	16983000	11999	OsKitaake06g159500
Deletion	Chr1	17055001	17089000	33999
Deletion	Chr5	17064001	17090000	25999	OsKitaake05g131400
Deletion	Chr6	17191001	17204000	12999	OsKitaake06g160700
Deletion	Chr1	17263001	17275000	11999
Deletion	Chr4	17408001	17425000	16999	4
Deletion	Chr10	17476001	17504000	27999	OsKitaake10g119300
Deletion	Chr2	17537001	17561000	23999	OsKitaake02g176100
Deletion	Chr1	17542001	17554000	11999
Deletion	Chr6	17568001	17581000	12999	2
Deletion	Chr9	17753001	17766000	12999	OsKitaake09g134600
Deletion	Chr2	17806001	17817000	10999	3
Deletion	Chr8	17956001	17968000	11999	OsKitaake08g133600
Deletion	Chr4	18037001	18053000	15999	3
Deletion	Chr4	18245001	18258000	12999	2
Deletion	Chr6	18352001	18382000	29999	OsKitaake06g168100
Deletion	Chr11	18618001	18629000	10999	2
Deletion	Chr2	18693001	18711000	17999	2
Deletion	Chr5	18943001	18958000	14999	OsKitaake05g148200
Deletion	Chr1	18955001	18967000	11999	2
Deletion	Chr5	19092001	19108000	15999	2
Deletion	Chr7	19216001	19226000	9999	2
Deletion	Chr12	19269001	19283000	13999	OsKitaake12g144200
Deletion	Chr9	19527001	19540000	12999	3
Deletion	Chr4	19639001	19666000	26999	2
Deletion	Chr1	19671001	19686000	14999	OsKitaake01g196000
Deletion	Chr6	19735131	19735499	368
Deletion	Chr3	19997001	20022000	24999	OsKitaake03g230101
Deletion	Chr4	20053001	20060000	6999	OsKitaake04g105500
Deletion	Chr3	20269001	20291000	21999
Deletion	Chr12	20657001	20669000	11999	2
Deletion	Chr1	20683001	20703000	19999	OsKitaake01g202700
Deletion	Chr6	20696001	20708000	11999	2
Deletion	Chr6	20849001	20972000	122999	8
Deletion	Chr7	21009817	21009823	6
Deletion	Chr9	21307001	21329000	21999	2
Deletion	Chr2	21318001	21331000	12999	OsKitaake02g205600
Deletion	Chr6	21346001	21359000	12999
Deletion	Chr1	21554001	21576000	21999
Deletion	Chr2	21560001	21573000	12999	3
Deletion	Chr11	21852001	21868000	15999	OsKitaake11g172700
Deletion	Chr4	21863001	21877000	13999	4
Deletion	Chr3	22311001	22323000	11999	OsKitaake03g242600
Deletion	Chr8	22312605	22312609	4
Deletion	Chr8	22402555	22402561	6
Deletion	Chr4	22740001	22757000	16999	6
Deletion	Chr12	22785001	22803000	17999	3
Deletion	Chr2	23245703	23245710	7
Deletion	Chr1	23255001	23270000	14999	OsKitaake01g222400
Deletion	Chr12	23445001	23459000	13999	OsKitaake12g187800
Deletion	Chr10	23834001	23912000	77999	19
Deletion	Chr3	24055001	24076000	20999	OsKitaake03g257300
Deletion	Chr12	24379001	24402000	22999	3
Deletion	Chr12	24477001	24491000	13999	2
Deletion	Chr11	24525001	24545000	19999	OsKitaake11g197800
Deletion	Chr8	24971001	24989000	17999	OsKitaake08g194166
Deletion	Chr12	25094001	25107000	12999	OsKitaake12g203400
Deletion	Chr3	25213001	25236000	22999	2
Deletion	Chr6	25258001	25273000	14999	OsKitaake06g223800
Deletion	Chr4	25350944	25350946	2	OsKitaake04g173000
Deletion	Chr7	26292001	26307000	14999	2
Deletion	Chr6	26351001	26365000	13999
Deletion	Chr1	26444059	26444063	4
Deletion	Chr11	26581001	26595000	13999	2
Deletion	Chr8	26627606	26627612	6
Deletion	Chr7	26845001	26869000	23999	OsKitaake07g250200
Deletion	Chr12	26879001	26890000	10999	2
Deletion	Chr2	27604001	27619000	14999	OsKitaake02g277500
Deletion	Chr2	27673001	27687000	13999	OsKitaake02g278000
Deletion	Chr2	27694001	27708000	13999	OsKitaake02g278100
Deletion	Chr5	27745001	27757000	11999	2
Deletion	Chr6	27775001	27790000	14999
Deletion	Chr4	27988920	27988929	9
Deletion	Chr2	28104118	28104120	2
Deletion	Chr3	28184001	28204000	19999	OsKitaake03g291400
Deletion	Chr6	28338001	28352000	13999
Deletion	Chr3	28590001	28608000	17999	2
Deletion	Chr3	28652001	28669000	16999
Deletion	Chr4	29079001	29100000	20999	4
Deletion	Chr1	29484001	29499000	14999	OsKitaake01g289000
Deletion	Chr4	29517001	29535000	17999	OsKitaake04g226500
Deletion	Chr3	29788001	29798000	9999	OsKitaake03g311500
Deletion	Chr3	30354001	30370000	15999	OsKitaake03g318500
Deletion	Chr3	30871001	30884000	12999	2
Deletion	Chr3	31016001	31024000	7999	OsKitaake03g325700
Deletion	Chr1	31482133	31482211	78	OsKitaake01g316000
Deletion	Chr2	31614001	31629000	14999	OsKitaake02g321880
Deletion	Chr2	32162001	32188000	25999	2
Deletion	Chr4	32812001	32839000	26999	4
Deletion	Chr1	33452001	33475000	22999	OsKitaake01g342500
Deletion	Chr1	33739001	33751000	11999	OsKitaake01g346400
Deletion	Chr4	34835001	34846000	10999	OsKitaake04g291550
Deletion	Chr1	35776001	35788000	11999	3
Deletion	Chr4	35859001	35875000	15999	OsKitaake04g307300
Deletion	Chr2	36255001	36267000	11999	2
Deletion	Chr2	36363001	36377000	13999	OsKitaake02g385300
Deletion	Chr3	37706001	37721000	14999	OsKitaake03g423700
Deletion	Chr1	41461001	41481000	19999
Deletion	Chr1	43008001	43031000	22999	2
Deletion	Chr1	44227001	44235000	7999	OsKitaake01g494300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	22880027	23381164	OsKitaake02g222700
Inversion	Chr2	22880070	23130496	2
Inversion	Chr5	24278706	24465956
Inversion	Chr5	24278715	24465970

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes