Search Kitaake

Mutant Information

Mutant Name	FN1451-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1451-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (6.67% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11174671 T-C Hetero INTERGENIC
SBS Chr2 14991463 T-G Hetero INTERGENIC
SBS Chr2 21513557 T-A Homo INTERGENIC
SBS Chr3 5635378 T-G Hetero INTRON
SBS Chr3 37723414 C-A Hetero INTERGENIC
SBS Chr4 5734092 C-T Hetero INTERGENIC
SBS Chr4 27974676 G-T Homo INTRON
SBS Chr5 15359259 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g118100
SBS Chr5 19103911 C-T Hetero INTRON
SBS Chr5 26982869 G-A Homo INTERGENIC
SBS Chr6 6720766 G-T Hetero INTERGENIC
SBS Chr6 7336335 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g094800
SBS Chr6 10941905 C-A Hetero INTERGENIC
SBS Chr7 4420532 T-G Hetero INTERGENIC
SBS Chr7 5973737 A-T Hetero INTERGENIC
SBS Chr7 6715473 G-C Hetero INTERGENIC
SBS Chr7 16863949 G-A Hetero INTERGENIC
SBS Chr7 18297095 A-T Hetero UTR_5_PRIME
SBS Chr8 9162009 C-A Hetero INTRON
SBS Chr9 1303738 G-A Hetero INTERGENIC
SBS Chr11 9037591 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g095800
SBS Chr12 798228 G-A Hetero INTERGENIC
SBS Chr12 13472051 G-T Hetero INTERGENIC

Deletions: 65

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 373001 382000 8999 3
Deletion Chr5 1124001 1133000 8999 OsKitaake05g014200
Deletion Chr2 1441580 1441584 4
Deletion Chr9 1596001 1614000 17999 OsKitaake09g009200
Deletion Chr5 1691001 1705000 13999 4
Deletion Chr7 3165001 3186000 20999 2
Deletion Chr2 3382001 3398000 15999 OsKitaake02g048900
Deletion Chr8 3396001 3403000 6999 OsKitaake08g038000
Deletion Chr2 3435001 3461000 25999 2
Deletion Chr2 3546001 3558000 11999 OsKitaake02g051600
Deletion Chr9 3720001 3735000 14999
Deletion Chr7 3944001 3966000 21999 OsKitaake07g050300
Deletion Chr1 4469001 4481000 11999 OsKitaake01g059500
Deletion Chr5 6193001 6211000 17999 OsKitaake05g064100
Deletion Chr7 6217001 6234000 16999 2
Deletion Chr4 6316001 6334000 17999 OsKitaake04g031700
Deletion Chr6 6987001 7001000 13999 OsKitaake06g090500
Deletion Chr11 7005001 7015000 9999 OsKitaake11g080300
Deletion Chr7 7069809 7069811 2
Deletion Chr10 7259001 7269000 9999
Deletion Chr2 8386001 8400000 13999 OsKitaake02g106600
Deletion Chr3 8707001 8722000 14999 OsKitaake03g119200
Deletion Chr1 9273001 9285000 11999 OsKitaake01g119300
Deletion Chr1 9643001 9657000 13999 OsKitaake01g123400
Deletion Chr12 10834001 10850000 15999 OsKitaake12g100400
Deletion Chr12 11447001 11462000 14999
Deletion Chr2 11674001 11682000 7999 OsKitaake02g134300
Deletion Chr5 11974861 11974863 2
Deletion Chr11 12133001 12143000 9999 OsKitaake11g112400
Deletion Chr2 12160001 12173000 12999 2
Deletion Chr11 12521222 12521707 485
Deletion Chr2 12744001 12762000 17999 4
Deletion Chr7 12770001 12779000 8999
Deletion Chr2 12832001 12851000 18999 OsKitaake02g143900
Deletion Chr3 13419001 13433000 13999 OsKitaake03g179400
Deletion Chr4 14330001 14344000 13999
Deletion Chr4 14677088 14677097 9
Deletion Chr1 14679001 14694000 14999 OsKitaake01g166200
Deletion Chr7 15001001 15014000 12999 OsKitaake07g125600
Deletion Chr7 15024001 15033000 8999 OsKitaake07g125700
Deletion Chr7 15607001 15617000 9999 OsKitaake07g129700
Deletion Chr6 18369001 18381000 11999 OsKitaake06g168100
Deletion Chr11 18413959 18413969 10
Deletion Chr1 18625001 18703000 77999 4
Deletion Chr10 18686001 18705000 18999 3
Deletion Chr2 18689001 18706000 16999 OsKitaake02g184000
Deletion Chr5 19096001 19106000 9999 2
Deletion Chr4 19646001 19658000 11999 OsKitaake04g102200
Deletion Chr3 20274001 20284000 9999
Deletion Chr1 20684001 20704000 19999 OsKitaake01g202700
Deletion Chr9 21308001 21331000 22999 2
Deletion Chr11 21853001 21870000 16999 2
Deletion Chr9 22113876 22113877 1
Deletion Chr12 23806001 23820000 13999 2
Deletion Chr6 24008001 24049000 40999 OsKitaake06g213000
Deletion Chr5 24374149 24374152 3
Deletion Chr12 24386001 24401000 14999 OsKitaake12g196500
Deletion Chr12 27133001 27154000 20999 OsKitaake12g228600
Deletion Chr7 27676001 27687000 10999 2
Deletion Chr3 28186001 28204000 17999 OsKitaake03g291400
Deletion Chr3 28653001 28667000 13999
Deletion Chr4 33134731 33134733 2
Deletion Chr3 33372801 33372802 1
Deletion Chr1 34055696 34055697 1 OsKitaake01g350500
Deletion Chr1 43010001 43030000 19999 2

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43985611 43985614 2
Insertion Chr2 6739112 6739115 2
Insertion Chr2 13999933 13999936 2
Insertion Chr2 26909750 26909753 2
Insertion Chr3 22138675 22138678 2
Insertion Chr2 35360528 35360531 2
Insertion Chr3 26310606 26310609 2
Insertion Chr5 4788774 4788776 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 12825356 13534778 OsKitaake07g113700
Inversion Chr7 12825361 13534777 OsKitaake07g113700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11174671	T-C	Hetero	INTERGENIC
SBS	Chr2	14991463	T-G	Hetero	INTERGENIC
SBS	Chr2	21513557	T-A	Homo	INTERGENIC
SBS	Chr3	5635378	T-G	Hetero	INTRON
SBS	Chr3	37723414	C-A	Hetero	INTERGENIC
SBS	Chr4	5734092	C-T	Hetero	INTERGENIC
SBS	Chr4	27974676	G-T	Homo	INTRON
SBS	Chr5	15359259	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g118100
SBS	Chr5	19103911	C-T	Hetero	INTRON
SBS	Chr5	26982869	G-A	Homo	INTERGENIC
SBS	Chr6	6720766	G-T	Hetero	INTERGENIC
SBS	Chr6	7336335	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g094800
SBS	Chr6	10941905	C-A	Hetero	INTERGENIC
SBS	Chr7	4420532	T-G	Hetero	INTERGENIC
SBS	Chr7	5973737	A-T	Hetero	INTERGENIC
SBS	Chr7	6715473	G-C	Hetero	INTERGENIC
SBS	Chr7	16863949	G-A	Hetero	INTERGENIC
SBS	Chr7	18297095	A-T	Hetero	UTR_5_PRIME
SBS	Chr8	9162009	C-A	Hetero	INTRON
SBS	Chr9	1303738	G-A	Hetero	INTERGENIC
SBS	Chr11	9037591	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g095800
SBS	Chr12	798228	G-A	Hetero	INTERGENIC
SBS	Chr12	13472051	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	373001	382000	8999	3
Deletion	Chr5	1124001	1133000	8999	OsKitaake05g014200
Deletion	Chr2	1441580	1441584	4
Deletion	Chr9	1596001	1614000	17999	OsKitaake09g009200
Deletion	Chr5	1691001	1705000	13999	4
Deletion	Chr7	3165001	3186000	20999	2
Deletion	Chr2	3382001	3398000	15999	OsKitaake02g048900
Deletion	Chr8	3396001	3403000	6999	OsKitaake08g038000
Deletion	Chr2	3435001	3461000	25999	2
Deletion	Chr2	3546001	3558000	11999	OsKitaake02g051600
Deletion	Chr9	3720001	3735000	14999
Deletion	Chr7	3944001	3966000	21999	OsKitaake07g050300
Deletion	Chr1	4469001	4481000	11999	OsKitaake01g059500
Deletion	Chr5	6193001	6211000	17999	OsKitaake05g064100
Deletion	Chr7	6217001	6234000	16999	2
Deletion	Chr4	6316001	6334000	17999	OsKitaake04g031700
Deletion	Chr6	6987001	7001000	13999	OsKitaake06g090500
Deletion	Chr11	7005001	7015000	9999	OsKitaake11g080300
Deletion	Chr7	7069809	7069811	2
Deletion	Chr10	7259001	7269000	9999
Deletion	Chr2	8386001	8400000	13999	OsKitaake02g106600
Deletion	Chr3	8707001	8722000	14999	OsKitaake03g119200
Deletion	Chr1	9273001	9285000	11999	OsKitaake01g119300
Deletion	Chr1	9643001	9657000	13999	OsKitaake01g123400
Deletion	Chr12	10834001	10850000	15999	OsKitaake12g100400
Deletion	Chr12	11447001	11462000	14999
Deletion	Chr2	11674001	11682000	7999	OsKitaake02g134300
Deletion	Chr5	11974861	11974863	2
Deletion	Chr11	12133001	12143000	9999	OsKitaake11g112400
Deletion	Chr2	12160001	12173000	12999	2
Deletion	Chr11	12521222	12521707	485
Deletion	Chr2	12744001	12762000	17999	4
Deletion	Chr7	12770001	12779000	8999
Deletion	Chr2	12832001	12851000	18999	OsKitaake02g143900
Deletion	Chr3	13419001	13433000	13999	OsKitaake03g179400
Deletion	Chr4	14330001	14344000	13999
Deletion	Chr4	14677088	14677097	9
Deletion	Chr1	14679001	14694000	14999	OsKitaake01g166200
Deletion	Chr7	15001001	15014000	12999	OsKitaake07g125600
Deletion	Chr7	15024001	15033000	8999	OsKitaake07g125700
Deletion	Chr7	15607001	15617000	9999	OsKitaake07g129700
Deletion	Chr6	18369001	18381000	11999	OsKitaake06g168100
Deletion	Chr11	18413959	18413969	10
Deletion	Chr1	18625001	18703000	77999	4
Deletion	Chr10	18686001	18705000	18999	3
Deletion	Chr2	18689001	18706000	16999	OsKitaake02g184000
Deletion	Chr5	19096001	19106000	9999	2
Deletion	Chr4	19646001	19658000	11999	OsKitaake04g102200
Deletion	Chr3	20274001	20284000	9999
Deletion	Chr1	20684001	20704000	19999	OsKitaake01g202700
Deletion	Chr9	21308001	21331000	22999	2
Deletion	Chr11	21853001	21870000	16999	2
Deletion	Chr9	22113876	22113877	1
Deletion	Chr12	23806001	23820000	13999	2
Deletion	Chr6	24008001	24049000	40999	OsKitaake06g213000
Deletion	Chr5	24374149	24374152	3
Deletion	Chr12	24386001	24401000	14999	OsKitaake12g196500
Deletion	Chr12	27133001	27154000	20999	OsKitaake12g228600
Deletion	Chr7	27676001	27687000	10999	2
Deletion	Chr3	28186001	28204000	17999	OsKitaake03g291400
Deletion	Chr3	28653001	28667000	13999
Deletion	Chr4	33134731	33134733	2
Deletion	Chr3	33372801	33372802	1
Deletion	Chr1	34055696	34055697	1	OsKitaake01g350500
Deletion	Chr1	43010001	43030000	19999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	12825356	13534778	OsKitaake07g113700
Inversion	Chr7	12825361	13534777	OsKitaake07g113700

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes