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Mutant Information

Mutant Name	FN1452-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1452-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12139852 G-T Hetero UTR_5_PRIME
SBS Chr1 28954170 G-A Hetero INTERGENIC
SBS Chr2 4208565 G-T Hetero INTERGENIC
SBS Chr2 4294023 A-T Hetero INTERGENIC
SBS Chr2 9684255 G-T Hetero SYNONYMOUS_CODING
SBS Chr2 14000382 G-A Homo INTERGENIC
SBS Chr3 10566201 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g145100
SBS Chr3 11223576 G-C Hetero INTERGENIC
SBS Chr3 11455771 T-C Hetero INTERGENIC
SBS Chr3 19038181 T-A Hetero INTERGENIC
SBS Chr4 11086972 G-T Hetero INTERGENIC
SBS Chr4 19310745 C-G Hetero INTERGENIC
SBS Chr5 12114310 C-A Hetero INTERGENIC
SBS Chr5 12114312 T-C Hetero INTERGENIC
SBS Chr6 4861295 T-G Homo INTERGENIC
SBS Chr6 9256698 C-T Hetero INTERGENIC
SBS Chr6 28877222 G-A Hetero INTERGENIC
SBS Chr8 3625353 G-T Hetero INTERGENIC
SBS Chr8 6462205 G-T Hetero INTERGENIC
SBS Chr8 9992431 G-A Hetero INTERGENIC
SBS Chr8 14992591 G-T Hetero INTRON
SBS Chr8 22802434 C-T Hetero INTERGENIC
SBS Chr9 708921 T-A Hetero INTERGENIC
SBS Chr9 2364335 A-T Hetero INTERGENIC
SBS Chr9 2600443 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g014300
SBS Chr9 20474838 G-A Hetero INTRON
SBS Chr10 6977087 G-A Hetero INTERGENIC
SBS Chr10 19528708 C-T Hetero INTERGENIC
SBS Chr12 9287368 G-C Hetero INTERGENIC
SBS Chr12 12842890 G-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 872512 872524 12 OsKitaake01g009500
Deletion Chr5 1366001 1383000 16999 OsKitaake05g017100
Deletion Chr2 3554001 3613000 58999 5
Deletion Chr4 3930747 3930752 5
Deletion Chr8 5933629 5933635 6
Deletion Chr5 8027090 8027092 2
Deletion Chr1 9639001 9663000 23999 3
Deletion Chr8 11416769 11416770 1
Deletion Chr6 15167001 15235000 67999 5
Deletion Chr2 15404484 15404490 6
Deletion Chr8 17489268 17489271 3
Deletion Chr4 19439001 19448000 8999 OsKitaake04g099601
Deletion Chr2 24688739 24688744 5
Deletion Chr12 26602540 26602542 2 OsKitaake12g221100
Deletion Chr11 27103289 27103291 2
Deletion Chr2 28618889 28618903 14
Deletion Chr1 35763581 35763583 2 OsKitaake01g378700

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 28182598 28182600 1
Insertion Chr1 28439711 28439714 2
Insertion Chr7 10931073 10931076 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12139852	G-T	Hetero	UTR_5_PRIME
SBS	Chr1	28954170	G-A	Hetero	INTERGENIC
SBS	Chr2	4208565	G-T	Hetero	INTERGENIC
SBS	Chr2	4294023	A-T	Hetero	INTERGENIC
SBS	Chr2	9684255	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	14000382	G-A	Homo	INTERGENIC
SBS	Chr3	10566201	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g145100
SBS	Chr3	11223576	G-C	Hetero	INTERGENIC
SBS	Chr3	11455771	T-C	Hetero	INTERGENIC
SBS	Chr3	19038181	T-A	Hetero	INTERGENIC
SBS	Chr4	11086972	G-T	Hetero	INTERGENIC
SBS	Chr4	19310745	C-G	Hetero	INTERGENIC
SBS	Chr5	12114310	C-A	Hetero	INTERGENIC
SBS	Chr5	12114312	T-C	Hetero	INTERGENIC
SBS	Chr6	4861295	T-G	Homo	INTERGENIC
SBS	Chr6	9256698	C-T	Hetero	INTERGENIC
SBS	Chr6	28877222	G-A	Hetero	INTERGENIC
SBS	Chr8	3625353	G-T	Hetero	INTERGENIC
SBS	Chr8	6462205	G-T	Hetero	INTERGENIC
SBS	Chr8	9992431	G-A	Hetero	INTERGENIC
SBS	Chr8	14992591	G-T	Hetero	INTRON
SBS	Chr8	22802434	C-T	Hetero	INTERGENIC
SBS	Chr9	708921	T-A	Hetero	INTERGENIC
SBS	Chr9	2364335	A-T	Hetero	INTERGENIC
SBS	Chr9	2600443	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g014300
SBS	Chr9	20474838	G-A	Hetero	INTRON
SBS	Chr10	6977087	G-A	Hetero	INTERGENIC
SBS	Chr10	19528708	C-T	Hetero	INTERGENIC
SBS	Chr12	9287368	G-C	Hetero	INTERGENIC
SBS	Chr12	12842890	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	872512	872524	12	OsKitaake01g009500
Deletion	Chr5	1366001	1383000	16999	OsKitaake05g017100
Deletion	Chr2	3554001	3613000	58999	5
Deletion	Chr4	3930747	3930752	5
Deletion	Chr8	5933629	5933635	6
Deletion	Chr5	8027090	8027092	2
Deletion	Chr1	9639001	9663000	23999	3
Deletion	Chr8	11416769	11416770	1
Deletion	Chr6	15167001	15235000	67999	5
Deletion	Chr2	15404484	15404490	6
Deletion	Chr8	17489268	17489271	3
Deletion	Chr4	19439001	19448000	8999	OsKitaake04g099601
Deletion	Chr2	24688739	24688744	5
Deletion	Chr12	26602540	26602542	2	OsKitaake12g221100
Deletion	Chr11	27103289	27103291	2
Deletion	Chr2	28618889	28618903	14
Deletion	Chr1	35763581	35763583	2	OsKitaake01g378700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes