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Mutant Information

Mutant Name	FN1456-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1456-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28150904 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g273500
SBS Chr2 11813796 G-A Homo INTRON
SBS Chr2 12398593 T-A Homo INTERGENIC
SBS Chr2 25657083 G-A Hetero INTERGENIC
SBS Chr3 9536887 T-C Homo INTERGENIC
SBS Chr4 14442831 T-A Homo INTERGENIC
SBS Chr5 978790 A-T Homo INTERGENIC
SBS Chr5 7780786 A-G Homo INTRON
SBS Chr6 923687 G-A Homo INTRON
SBS Chr6 5174734 T-C Hetero UTR_3_PRIME
SBS Chr6 7706595 G-A Hetero INTERGENIC
SBS Chr6 10524032 T-A Hetero INTRON
SBS Chr7 19736875 C-G Hetero INTERGENIC
SBS Chr8 10183119 G-A Hetero INTERGENIC
SBS Chr8 19249210 C-A Homo INTERGENIC
SBS Chr8 28093343 G-A Homo INTERGENIC
SBS Chr9 13114550 T-G Hetero INTERGENIC
SBS Chr10 7257844 C-T Hetero INTERGENIC
SBS Chr10 16132118 G-T Homo INTERGENIC
SBS Chr10 23250869 A-T Hetero INTERGENIC
SBS Chr11 8956491 A-C Hetero UTR_3_PRIME
SBS Chr11 17887576 T-G Hetero INTERGENIC
SBS Chr12 2186656 C-T Hetero INTERGENIC
SBS Chr12 4750257 T-C Hetero INTERGENIC
SBS Chr12 14829116 T-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 863960 863962 2 OsKitaake06g008700
Deletion Chr7 10847671 10847682 11
Deletion Chr3 11031008 11031016 8
Deletion Chr8 11529001 11547000 17999
Deletion Chr2 11583634 11583636 2
Deletion Chr10 16130236 16130241 5
Deletion Chr8 16943540 16943541 1
Deletion Chr11 22076945 22076951 6
Deletion Chr1 42727001 42766000 38999 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24595616 24595619 2
Insertion Chr5 16520595 16520597 1
Insertion Chr3 20033409 20033422 12

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 1905186 1976408 OsKitaake06g025000
Inversion Chr6 5528881 5618897
Inversion Chr6 5528983 5618900
Inversion Chr7 19230315 19485732

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 19230321 Chr6 1976420 OsKitaake06g025000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28150904	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g273500
SBS	Chr2	11813796	G-A	Homo	INTRON
SBS	Chr2	12398593	T-A	Homo	INTERGENIC
SBS	Chr2	25657083	G-A	Hetero	INTERGENIC
SBS	Chr3	9536887	T-C	Homo	INTERGENIC
SBS	Chr4	14442831	T-A	Homo	INTERGENIC
SBS	Chr5	978790	A-T	Homo	INTERGENIC
SBS	Chr5	7780786	A-G	Homo	INTRON
SBS	Chr6	923687	G-A	Homo	INTRON
SBS	Chr6	5174734	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	7706595	G-A	Hetero	INTERGENIC
SBS	Chr6	10524032	T-A	Hetero	INTRON
SBS	Chr7	19736875	C-G	Hetero	INTERGENIC
SBS	Chr8	10183119	G-A	Hetero	INTERGENIC
SBS	Chr8	19249210	C-A	Homo	INTERGENIC
SBS	Chr8	28093343	G-A	Homo	INTERGENIC
SBS	Chr9	13114550	T-G	Hetero	INTERGENIC
SBS	Chr10	7257844	C-T	Hetero	INTERGENIC
SBS	Chr10	16132118	G-T	Homo	INTERGENIC
SBS	Chr10	23250869	A-T	Hetero	INTERGENIC
SBS	Chr11	8956491	A-C	Hetero	UTR_3_PRIME
SBS	Chr11	17887576	T-G	Hetero	INTERGENIC
SBS	Chr12	2186656	C-T	Hetero	INTERGENIC
SBS	Chr12	4750257	T-C	Hetero	INTERGENIC
SBS	Chr12	14829116	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	863960	863962	2	OsKitaake06g008700
Deletion	Chr7	10847671	10847682	11
Deletion	Chr3	11031008	11031016	8
Deletion	Chr8	11529001	11547000	17999
Deletion	Chr2	11583634	11583636	2
Deletion	Chr10	16130236	16130241	5
Deletion	Chr8	16943540	16943541	1
Deletion	Chr11	22076945	22076951	6
Deletion	Chr1	42727001	42766000	38999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1905186	1976408	OsKitaake06g025000
Inversion	Chr6	5528881	5618897
Inversion	Chr6	5528983	5618900
Inversion	Chr7	19230315	19485732

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes