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Mutant Information

Mutant Name	FN1460-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1460-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3110758 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g040000
SBS Chr1 16022962 T-C Homo INTERGENIC
SBS Chr1 29815224 C-A Homo INTERGENIC
SBS Chr1 37040614 G-A Hetero INTERGENIC
SBS Chr2 1311863 G-A Hetero UTR_3_PRIME
SBS Chr2 4606264 C-T Hetero INTERGENIC
SBS Chr2 7784643 G-T Hetero INTERGENIC
SBS Chr2 7784644 T-A Hetero INTERGENIC
SBS Chr2 17563340 T-C Hetero INTERGENIC
SBS Chr2 22561926 G-A Homo INTERGENIC
SBS Chr2 23532035 T-C Hetero INTERGENIC
SBS Chr2 24905766 G-A Hetero INTERGENIC
SBS Chr2 25322143 A-G Hetero INTERGENIC
SBS Chr3 10092079 T-C Hetero INTERGENIC
SBS Chr3 21815232 A-T Hetero INTRON
SBS Chr3 34439516 G-A Hetero INTERGENIC
SBS Chr4 19327915 T-A Hetero INTERGENIC
SBS Chr4 21465510 C-G Homo NON_SYNONYMOUS_CODING OsKitaake04g120300
SBS Chr5 16642773 C-T Hetero INTERGENIC
SBS Chr6 7058996 G-A Hetero INTERGENIC
SBS Chr6 8980049 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g108200
SBS Chr6 16965949 T-A Hetero INTRON
SBS Chr6 18791351 C-G Hetero INTRON
SBS Chr7 5564611 C-T Hetero INTERGENIC
SBS Chr7 22135516 G-A Homo INTERGENIC
SBS Chr8 8119743 T-C Hetero INTRON
SBS Chr8 10125536 G-A Hetero INTERGENIC
SBS Chr8 10150147 T-C Hetero INTERGENIC
SBS Chr8 10820042 C-T Hetero INTERGENIC
SBS Chr9 1587374 C-T Hetero INTERGENIC
SBS Chr10 3806935 G-A Homo INTERGENIC
SBS Chr10 7797632 C-A Homo INTERGENIC
SBS Chr10 11777757 G-A Homo INTERGENIC
SBS Chr11 14402449 G-A Homo INTERGENIC
SBS Chr11 21349216 G-C Hetero INTRON
SBS Chr11 29184559 C-T Hetero INTERGENIC
SBS Chr12 3580835 C-A Homo INTERGENIC
SBS Chr12 14671188 A-G Homo INTERGENIC
SBS Chr12 15959951 G-T Homo INTERGENIC
SBS Chr12 18715959 C-T Hetero INTERGENIC
SBS Chr12 20439553 A-C Homo INTERGENIC
SBS Chr12 23328006 G-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1657027 1657039 12
Deletion Chr7 5226836 5226837 1
Deletion Chr12 7650873 7650881 8
Deletion Chr6 8645001 8952000 306999 15
Deletion Chr4 8938038 8938039 1
Deletion Chr8 9786001 9847000 60999 OsKitaake08g091600
Deletion Chr3 10952680 10952684 4
Deletion Chr4 11599998 11600002 4
Deletion Chr11 12482728 12482737 9
Deletion Chr12 14714994 14714998 4
Deletion Chr1 18319526 18319528 2
Deletion Chr1 19359567 19359568 1
Deletion Chr10 19965511 19965528 17 OsKitaake10g150200
Deletion Chr3 20514162 20514164 2
Deletion Chr10 22409801 22409802 1
Deletion Chr10 23756283 23756293 10
Deletion Chr8 28457977 28457988 11
Deletion Chr8 28874035 28874048 13
Deletion Chr3 32183266 32183279 13

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 29561350 29561353 2
Insertion Chr8 17352396 17352399 2
Insertion Chr3 16743903 16743905 1
Insertion Chr4 8898522 8898524 1
Insertion Chr8 1396065 1396067 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 1797866 Chr3 29336861 OsKitaake03g305900
Translocation Chr7 1798375 Chr3 29336869 OsKitaake03g305900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3110758	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g040000
SBS	Chr1	16022962	T-C	Homo	INTERGENIC
SBS	Chr1	29815224	C-A	Homo	INTERGENIC
SBS	Chr1	37040614	G-A	Hetero	INTERGENIC
SBS	Chr2	1311863	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	4606264	C-T	Hetero	INTERGENIC
SBS	Chr2	7784643	G-T	Hetero	INTERGENIC
SBS	Chr2	7784644	T-A	Hetero	INTERGENIC
SBS	Chr2	17563340	T-C	Hetero	INTERGENIC
SBS	Chr2	22561926	G-A	Homo	INTERGENIC
SBS	Chr2	23532035	T-C	Hetero	INTERGENIC
SBS	Chr2	24905766	G-A	Hetero	INTERGENIC
SBS	Chr2	25322143	A-G	Hetero	INTERGENIC
SBS	Chr3	10092079	T-C	Hetero	INTERGENIC
SBS	Chr3	21815232	A-T	Hetero	INTRON
SBS	Chr3	34439516	G-A	Hetero	INTERGENIC
SBS	Chr4	19327915	T-A	Hetero	INTERGENIC
SBS	Chr4	21465510	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g120300
SBS	Chr5	16642773	C-T	Hetero	INTERGENIC
SBS	Chr6	7058996	G-A	Hetero	INTERGENIC
SBS	Chr6	8980049	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g108200
SBS	Chr6	16965949	T-A	Hetero	INTRON
SBS	Chr6	18791351	C-G	Hetero	INTRON
SBS	Chr7	5564611	C-T	Hetero	INTERGENIC
SBS	Chr7	22135516	G-A	Homo	INTERGENIC
SBS	Chr8	8119743	T-C	Hetero	INTRON
SBS	Chr8	10125536	G-A	Hetero	INTERGENIC
SBS	Chr8	10150147	T-C	Hetero	INTERGENIC
SBS	Chr8	10820042	C-T	Hetero	INTERGENIC
SBS	Chr9	1587374	C-T	Hetero	INTERGENIC
SBS	Chr10	3806935	G-A	Homo	INTERGENIC
SBS	Chr10	7797632	C-A	Homo	INTERGENIC
SBS	Chr10	11777757	G-A	Homo	INTERGENIC
SBS	Chr11	14402449	G-A	Homo	INTERGENIC
SBS	Chr11	21349216	G-C	Hetero	INTRON
SBS	Chr11	29184559	C-T	Hetero	INTERGENIC
SBS	Chr12	3580835	C-A	Homo	INTERGENIC
SBS	Chr12	14671188	A-G	Homo	INTERGENIC
SBS	Chr12	15959951	G-T	Homo	INTERGENIC
SBS	Chr12	18715959	C-T	Hetero	INTERGENIC
SBS	Chr12	20439553	A-C	Homo	INTERGENIC
SBS	Chr12	23328006	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1657027	1657039	12
Deletion	Chr7	5226836	5226837	1
Deletion	Chr12	7650873	7650881	8
Deletion	Chr6	8645001	8952000	306999	15
Deletion	Chr4	8938038	8938039	1
Deletion	Chr8	9786001	9847000	60999	OsKitaake08g091600
Deletion	Chr3	10952680	10952684	4
Deletion	Chr4	11599998	11600002	4
Deletion	Chr11	12482728	12482737	9
Deletion	Chr12	14714994	14714998	4
Deletion	Chr1	18319526	18319528	2
Deletion	Chr1	19359567	19359568	1
Deletion	Chr10	19965511	19965528	17	OsKitaake10g150200
Deletion	Chr3	20514162	20514164	2
Deletion	Chr10	22409801	22409802	1
Deletion	Chr10	23756283	23756293	10
Deletion	Chr8	28457977	28457988	11
Deletion	Chr8	28874035	28874048	13
Deletion	Chr3	32183266	32183279	13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1797866	Chr3	29336861	OsKitaake03g305900
Translocation	Chr7	1798375	Chr3	29336869	OsKitaake03g305900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes