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Mutant Information

Mutant Name	FN1462-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1462-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21847555 G-A Hetero INTERGENIC
SBS Chr2 5654602 A-G Homo INTERGENIC
SBS Chr2 26294829 T-G Hetero INTERGENIC
SBS Chr3 497376 C-T Hetero INTERGENIC
SBS Chr3 8606673 A-T Hetero INTERGENIC
SBS Chr3 14353000 T-A Hetero UTR_3_PRIME
SBS Chr3 14353001 G-A Hetero UTR_3_PRIME
SBS Chr3 20594722 T-C Hetero INTERGENIC
SBS Chr5 1388728 A-T Hetero STOP_GAINED OsKitaake05g017200
SBS Chr6 10013743 C-T Hetero INTERGENIC
SBS Chr6 30235835 G-A Homo INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr7 20922681 G-A Homo INTERGENIC
SBS Chr7 21760530 T-A Homo INTRON
SBS Chr8 1141779 G-A Hetero INTERGENIC
SBS Chr8 13995283 G-A Homo INTERGENIC
SBS Chr8 23839508 G-C Hetero INTERGENIC
SBS Chr10 4935305 C-T Hetero INTERGENIC
SBS Chr10 6314587 G-T Homo INTERGENIC
SBS Chr11 14076673 T-G Hetero INTERGENIC
SBS Chr12 1216880 C-A Hetero UTR_5_PRIME
SBS Chr12 8141943 G-T Homo INTERGENIC
SBS Chr12 22216628 A-T Hetero INTERGENIC
SBS Chr12 23543032 C-T Hetero INTERGENIC
SBS Chr12 24723392 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 304480 304481 1 OsKitaake08g004300
Deletion Chr7 3367914 3367932 18
Deletion Chr9 5350554 5350557 3
Deletion Chr10 6502660 6502663 3
Deletion Chr9 7212400 7212403 3
Deletion Chr8 8375774 8375779 5
Deletion Chr1 11569881 11570002 121
Deletion Chr8 13234785 13234790 5
Deletion Chr3 14303396 14303397 1
Deletion Chr11 18583001 18702000 118999 14
Deletion Chr11 20138634 20138731 97
Deletion Chr6 23833744 23833752 8
Deletion Chr1 27960414 27960514 100
Deletion Chr1 31984104 31984113 9
Deletion Chr1 33223217 33223218 1
Deletion Chr1 43456087 43456089 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 20113128 20113131 2
Insertion Chr7 26091602 26091605 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 9818548 Chr3 31482929
Translocation Chr6 9818552 Chr3 31482833

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21847555	G-A	Hetero	INTERGENIC
SBS	Chr2	5654602	A-G	Homo	INTERGENIC
SBS	Chr2	26294829	T-G	Hetero	INTERGENIC
SBS	Chr3	497376	C-T	Hetero	INTERGENIC
SBS	Chr3	8606673	A-T	Hetero	INTERGENIC
SBS	Chr3	14353000	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	14353001	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	20594722	T-C	Hetero	INTERGENIC
SBS	Chr5	1388728	A-T	Hetero	STOP_GAINED	OsKitaake05g017200
SBS	Chr6	10013743	C-T	Hetero	INTERGENIC
SBS	Chr6	30235835	G-A	Homo	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr7	20922681	G-A	Homo	INTERGENIC
SBS	Chr7	21760530	T-A	Homo	INTRON
SBS	Chr8	1141779	G-A	Hetero	INTERGENIC
SBS	Chr8	13995283	G-A	Homo	INTERGENIC
SBS	Chr8	23839508	G-C	Hetero	INTERGENIC
SBS	Chr10	4935305	C-T	Hetero	INTERGENIC
SBS	Chr10	6314587	G-T	Homo	INTERGENIC
SBS	Chr11	14076673	T-G	Hetero	INTERGENIC
SBS	Chr12	1216880	C-A	Hetero	UTR_5_PRIME
SBS	Chr12	8141943	G-T	Homo	INTERGENIC
SBS	Chr12	22216628	A-T	Hetero	INTERGENIC
SBS	Chr12	23543032	C-T	Hetero	INTERGENIC
SBS	Chr12	24723392	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	304480	304481	1	OsKitaake08g004300
Deletion	Chr7	3367914	3367932	18
Deletion	Chr9	5350554	5350557	3
Deletion	Chr10	6502660	6502663	3
Deletion	Chr9	7212400	7212403	3
Deletion	Chr8	8375774	8375779	5
Deletion	Chr1	11569881	11570002	121
Deletion	Chr8	13234785	13234790	5
Deletion	Chr3	14303396	14303397	1
Deletion	Chr11	18583001	18702000	118999	14
Deletion	Chr11	20138634	20138731	97
Deletion	Chr6	23833744	23833752	8
Deletion	Chr1	27960414	27960514	100
Deletion	Chr1	31984104	31984113	9
Deletion	Chr1	33223217	33223218	1
Deletion	Chr1	43456087	43456089	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	9818548	Chr3	31482929
Translocation	Chr6	9818552	Chr3	31482833

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes