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Mutant Information

Mutant Name	FN1466-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1466-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2074966 T-A Hetero INTERGENIC
SBS Chr1 11586573 T-C Homo INTRON
SBS Chr1 16143256 T-A Hetero INTERGENIC
SBS Chr1 29552838 G-T Hetero INTRON
SBS Chr1 29552841 A-G Hetero INTRON
SBS Chr2 9124068 G-A Homo INTRON
SBS Chr2 33819732 A-G Hetero INTERGENIC
SBS Chr3 11264234 T-A Hetero INTERGENIC
SBS Chr4 3705114 A-T Homo INTERGENIC
SBS Chr4 17979426 T-C Hetero INTERGENIC
SBS Chr4 18384681 G-A Hetero INTERGENIC
SBS Chr4 19607443 G-A Hetero INTERGENIC
SBS Chr4 28906903 G-A Homo INTERGENIC
SBS Chr5 754624 C-G Homo NON_SYNONYMOUS_CODING OsKitaake05g009000
SBS Chr5 4169421 G-T Homo INTERGENIC
SBS Chr6 12193633 G-A Hetero INTERGENIC
SBS Chr7 6663469 A-T Homo INTERGENIC
SBS Chr7 28097106 G-A Hetero INTERGENIC
SBS Chr8 4269167 T-A Homo NON_SYNONYMOUS_CODING OsKitaake08g048200
SBS Chr8 19667889 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g144600
SBS Chr10 17863465 A-G Hetero SYNONYMOUS_CODING
SBS Chr11 623266 G-A Homo INTERGENIC
SBS Chr11 28634139 C-T Hetero INTRON
SBS Chr12 12907947 A-T Hetero INTERGENIC
SBS Chr12 22749799 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6754 7106 352
Deletion Chr4 2090917 2090919 2
Deletion Chr7 5623178 5623184 6
Deletion Chr11 6823024 6823025 1
Deletion Chr10 8096190 8096273 83
Deletion Chr12 12652021 12652029 8
Deletion Chr12 13783918 13783919 1
Deletion Chr6 15201297 15201306 9
Deletion Chr8 15398909 15398913 4 OsKitaake08g137600
Deletion Chr2 16916123 16916132 9
Deletion Chr1 21640001 21655000 14999 OsKitaake01g208600
Deletion Chr1 23692627 23692628 1
Deletion Chr3 25856063 25856068 5
Deletion Chr1 39065001 39150000 84999 17
Deletion Chr1 42193940 42193943 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29010427 29010429 1
Insertion Chr2 21400340 21400343 2
Insertion Chr2 26437338 26437342 3
Insertion Chr2 18179771 18179773 1
Insertion Chr11 11259765 11259768 2 OsKitaake11g107900

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 17737504 17877826 OsKitaake10g124500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 14559093 Chr1 39064195 OsKitaake01g419300
Translocation Chr9 14559097 Chr1 39064923 OsKitaake01g419300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2074966	T-A	Hetero	INTERGENIC
SBS	Chr1	11586573	T-C	Homo	INTRON
SBS	Chr1	16143256	T-A	Hetero	INTERGENIC
SBS	Chr1	29552838	G-T	Hetero	INTRON
SBS	Chr1	29552841	A-G	Hetero	INTRON
SBS	Chr2	9124068	G-A	Homo	INTRON
SBS	Chr2	33819732	A-G	Hetero	INTERGENIC
SBS	Chr3	11264234	T-A	Hetero	INTERGENIC
SBS	Chr4	3705114	A-T	Homo	INTERGENIC
SBS	Chr4	17979426	T-C	Hetero	INTERGENIC
SBS	Chr4	18384681	G-A	Hetero	INTERGENIC
SBS	Chr4	19607443	G-A	Hetero	INTERGENIC
SBS	Chr4	28906903	G-A	Homo	INTERGENIC
SBS	Chr5	754624	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g009000
SBS	Chr5	4169421	G-T	Homo	INTERGENIC
SBS	Chr6	12193633	G-A	Hetero	INTERGENIC
SBS	Chr7	6663469	A-T	Homo	INTERGENIC
SBS	Chr7	28097106	G-A	Hetero	INTERGENIC
SBS	Chr8	4269167	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g048200
SBS	Chr8	19667889	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g144600
SBS	Chr10	17863465	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	623266	G-A	Homo	INTERGENIC
SBS	Chr11	28634139	C-T	Hetero	INTRON
SBS	Chr12	12907947	A-T	Hetero	INTERGENIC
SBS	Chr12	22749799	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6754	7106	352
Deletion	Chr4	2090917	2090919	2
Deletion	Chr7	5623178	5623184	6
Deletion	Chr11	6823024	6823025	1
Deletion	Chr10	8096190	8096273	83
Deletion	Chr12	12652021	12652029	8
Deletion	Chr12	13783918	13783919	1
Deletion	Chr6	15201297	15201306	9
Deletion	Chr8	15398909	15398913	4	OsKitaake08g137600
Deletion	Chr2	16916123	16916132	9
Deletion	Chr1	21640001	21655000	14999	OsKitaake01g208600
Deletion	Chr1	23692627	23692628	1
Deletion	Chr3	25856063	25856068	5
Deletion	Chr1	39065001	39150000	84999	17
Deletion	Chr1	42193940	42193943	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	17737504	17877826	OsKitaake10g124500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes