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Mutant Information

Mutant Name	FN1467-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1467-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1379502 T-A Hetero UTR_5_PRIME
SBS Chr1 31227681 G-A Hetero INTERGENIC
SBS Chr1 36785115 T-A Homo INTERGENIC
SBS Chr1 40961796 T-C Hetero INTERGENIC
SBS Chr2 7356293 A-T Homo INTERGENIC
SBS Chr2 22315767 C-A Homo INTERGENIC
SBS Chr2 22315768 A-T Homo INTERGENIC
SBS Chr2 22315770 A-T Homo INTERGENIC
SBS Chr3 19120315 G-A Hetero INTERGENIC
SBS Chr3 34722386 C-A Hetero INTRON
SBS Chr3 35695586 G-A Hetero INTERGENIC
SBS Chr3 35740988 A-T Hetero INTERGENIC
SBS Chr4 716568 T-C Hetero INTERGENIC
SBS Chr4 3452287 A-T Hetero INTERGENIC
SBS Chr4 9117364 A-G Hetero INTERGENIC
SBS Chr4 9639816 A-T Hetero INTERGENIC
SBS Chr4 23832420 C-T Homo INTERGENIC
SBS Chr4 29612969 C-T Hetero INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr5 26325591 G-A Homo INTERGENIC
SBS Chr5 29657219 G-A Hetero INTERGENIC
SBS Chr6 3350657 G-A Hetero INTRON
SBS Chr6 3751402 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g052000
SBS Chr7 2445393 A-G Homo INTRON
SBS Chr7 10461734 G-A Hetero INTERGENIC
SBS Chr7 28811032 C-T Hetero INTERGENIC
SBS Chr8 14968546 A-G Homo INTERGENIC
SBS Chr8 23108214 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g177200
SBS Chr8 23494522 C-A Hetero UTR_3_PRIME
SBS Chr8 26097164 C-T Hetero INTERGENIC
SBS Chr8 26962481 T-C Hetero INTERGENIC
SBS Chr8 26962508 T-A Hetero INTERGENIC
SBS Chr9 14327668 A-G Hetero INTERGENIC
SBS Chr10 10295183 A-T Hetero INTERGENIC
SBS Chr10 20097708 G-A Hetero INTERGENIC
SBS Chr10 20097709 G-A Hetero INTERGENIC
SBS Chr11 11187789 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g107400
SBS Chr11 26640118 C-T Hetero INTRON
SBS Chr12 2839910 G-T Hetero INTERGENIC
SBS Chr12 3382628 G-T Homo INTERGENIC
SBS Chr12 5076014 A-T Homo INTERGENIC
SBS Chr12 19205315 C-T Homo INTERGENIC
SBS Chr12 26390667 A-G Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1489111 1489117 6
Deletion Chr8 2704318 2704327 9
Deletion Chr1 3891005 3891007 2
Deletion Chr10 12834913 12834915 2
Deletion Chr3 14564167 14564181 14
Deletion Chr3 16070648 16070650 2
Deletion Chr7 17116441 17116444 3
Deletion Chr10 17655711 17655712 1
Deletion Chr2 20155001 20174000 18999
Deletion Chr2 20692001 20715000 22999
Deletion Chr11 22453853 22453854 1 OsKitaake11g178500
Deletion Chr4 23499612 23499614 2
Deletion Chr1 27960414 27960514 100

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13087880 13087883 2
Insertion Chr4 8898522 8898524 1
Insertion Chr7 11984659 11984661 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 20099787 20119826 OsKitaake10g152300
Inversion Chr10 20099791 20119831 OsKitaake10g152300
Inversion Chr1 32389758 32576982 OsKitaake01g327500
Inversion Chr1 32390031 32576991 OsKitaake01g327500

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 4243872 Chr1 32389767 2
Translocation Chr8 5496368 Chr2 1644532 2
Translocation Chr8 5497351 Chr1 32390020 2
Translocation Chr8 5497360 Chr2 4243874 2
Translocation Chr7 17097949 Chr1 30294886 OsKitaake07g139500
Translocation Chr7 17097966 Chr1 30295429 OsKitaake07g139500
Translocation Chr10 19346847 Chr4 7452233

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1379502	T-A	Hetero	UTR_5_PRIME
SBS	Chr1	31227681	G-A	Hetero	INTERGENIC
SBS	Chr1	36785115	T-A	Homo	INTERGENIC
SBS	Chr1	40961796	T-C	Hetero	INTERGENIC
SBS	Chr2	7356293	A-T	Homo	INTERGENIC
SBS	Chr2	22315767	C-A	Homo	INTERGENIC
SBS	Chr2	22315768	A-T	Homo	INTERGENIC
SBS	Chr2	22315770	A-T	Homo	INTERGENIC
SBS	Chr3	19120315	G-A	Hetero	INTERGENIC
SBS	Chr3	34722386	C-A	Hetero	INTRON
SBS	Chr3	35695586	G-A	Hetero	INTERGENIC
SBS	Chr3	35740988	A-T	Hetero	INTERGENIC
SBS	Chr4	716568	T-C	Hetero	INTERGENIC
SBS	Chr4	3452287	A-T	Hetero	INTERGENIC
SBS	Chr4	9117364	A-G	Hetero	INTERGENIC
SBS	Chr4	9639816	A-T	Hetero	INTERGENIC
SBS	Chr4	23832420	C-T	Homo	INTERGENIC
SBS	Chr4	29612969	C-T	Hetero	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr5	26325591	G-A	Homo	INTERGENIC
SBS	Chr5	29657219	G-A	Hetero	INTERGENIC
SBS	Chr6	3350657	G-A	Hetero	INTRON
SBS	Chr6	3751402	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g052000
SBS	Chr7	2445393	A-G	Homo	INTRON
SBS	Chr7	10461734	G-A	Hetero	INTERGENIC
SBS	Chr7	28811032	C-T	Hetero	INTERGENIC
SBS	Chr8	14968546	A-G	Homo	INTERGENIC
SBS	Chr8	23108214	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g177200
SBS	Chr8	23494522	C-A	Hetero	UTR_3_PRIME
SBS	Chr8	26097164	C-T	Hetero	INTERGENIC
SBS	Chr8	26962481	T-C	Hetero	INTERGENIC
SBS	Chr8	26962508	T-A	Hetero	INTERGENIC
SBS	Chr9	14327668	A-G	Hetero	INTERGENIC
SBS	Chr10	10295183	A-T	Hetero	INTERGENIC
SBS	Chr10	20097708	G-A	Hetero	INTERGENIC
SBS	Chr10	20097709	G-A	Hetero	INTERGENIC
SBS	Chr11	11187789	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g107400
SBS	Chr11	26640118	C-T	Hetero	INTRON
SBS	Chr12	2839910	G-T	Hetero	INTERGENIC
SBS	Chr12	3382628	G-T	Homo	INTERGENIC
SBS	Chr12	5076014	A-T	Homo	INTERGENIC
SBS	Chr12	19205315	C-T	Homo	INTERGENIC
SBS	Chr12	26390667	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1489111	1489117	6
Deletion	Chr8	2704318	2704327	9
Deletion	Chr1	3891005	3891007	2
Deletion	Chr10	12834913	12834915	2
Deletion	Chr3	14564167	14564181	14
Deletion	Chr3	16070648	16070650	2
Deletion	Chr7	17116441	17116444	3
Deletion	Chr10	17655711	17655712	1
Deletion	Chr2	20155001	20174000	18999
Deletion	Chr2	20692001	20715000	22999
Deletion	Chr11	22453853	22453854	1	OsKitaake11g178500
Deletion	Chr4	23499612	23499614	2
Deletion	Chr1	27960414	27960514	100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	20099787	20119826	OsKitaake10g152300
Inversion	Chr10	20099791	20119831	OsKitaake10g152300
Inversion	Chr1	32389758	32576982	OsKitaake01g327500
Inversion	Chr1	32390031	32576991	OsKitaake01g327500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes