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Mutant Information

Mutant Name	FN1470-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1470-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6701369 C-T Hetero INTERGENIC
SBS Chr1 17997586 G-A Hetero INTERGENIC
SBS Chr1 18810041 A-G Hetero INTERGENIC
SBS Chr1 22573624 A-T Hetero INTERGENIC
SBS Chr1 39650037 G-C Homo UTR_3_PRIME
SBS Chr1 43495746 C-T Hetero UTR_3_PRIME
SBS Chr2 35619523 T-A Hetero INTERGENIC
SBS Chr3 4381231 C-A Hetero INTERGENIC
SBS Chr3 34566393 C-T Homo INTERGENIC
SBS Chr3 34969354 C-A Homo INTERGENIC
SBS Chr3 34969355 C-A Homo INTERGENIC
SBS Chr4 15779891 C-A Hetero INTERGENIC
SBS Chr4 23406716 T-A Hetero INTERGENIC
SBS Chr5 1572469 C-A Hetero INTERGENIC
SBS Chr5 12325671 C-T Hetero START_GAINED
SBS Chr5 19433749 G-A Homo INTERGENIC
SBS Chr5 20453670 T-C Homo INTERGENIC
SBS Chr5 29419541 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 29547774 G-A Homo INTERGENIC
SBS Chr6 8078946 G-A Homo INTERGENIC
SBS Chr6 9697393 G-A Hetero INTERGENIC
SBS Chr6 21935503 T-G Hetero UTR_5_PRIME
SBS Chr6 23323184 C-A Hetero INTERGENIC
SBS Chr6 26209763 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 26209764 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g234600
SBS Chr6 26430622 C-G Hetero INTERGENIC
SBS Chr7 8481715 T-C Hetero INTERGENIC
SBS Chr7 9701754 C-G Hetero INTERGENIC
SBS Chr7 11439964 G-A Hetero INTERGENIC
SBS Chr7 25252394 G-A Hetero INTERGENIC
SBS Chr8 4078623 C-A Hetero INTERGENIC
SBS Chr9 4577601 A-G Hetero INTERGENIC
SBS Chr11 15113766 C-T Hetero INTERGENIC
SBS Chr11 25180305 A-G Homo INTERGENIC

Deletions: 192

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 163001 190000 26999 7
Deletion Chr3 172001 186000 13999 4
Deletion Chr3 538001 557000 18999 3
Deletion Chr2 597001 612000 14999 OsKitaake02g009000
Deletion Chr10 960001 975000 14999
Deletion Chr9 1142001 1163000 20999 OsKitaake09g006900
Deletion Chr2 1639001 1649000 9999 OsKitaake02g025800
Deletion Chr7 1646001 1671000 24999 7
Deletion Chr11 1660001 1673000 12999 4
Deletion Chr3 1674001 1691000 16999 OsKitaake03g023750
Deletion Chr12 1737001 1747000 9999 OsKitaake12g026400
Deletion Chr11 2225001 2237000 11999 OsKitaake11g032600
Deletion Chr7 2644001 2656000 11999
Deletion Chr3 3330001 3351000 20999 2
Deletion Chr5 3371001 3390000 18999 2
Deletion Chr5 3394001 3420000 25999 3
Deletion Chr2 3443001 3454000 10999 OsKitaake02g050200
Deletion Chr1 3644001 3659000 14999 OsKitaake01g049000
Deletion Chr8 3672001 3692000 19999 OsKitaake08g041100
Deletion Chr9 3704001 3734000 29999 OsKitaake09g019400
Deletion Chr5 3749001 3758000 8999 OsKitaake05g044900
Deletion Chr7 3945001 3959000 13999
Deletion Chr8 4600001 4611000 10999 OsKitaake08g052000
Deletion Chr7 4787001 4812000 24999 2
Deletion Chr4 4870001 4904000 33999 3
Deletion Chr6 4900001 4937000 36999 3
Deletion Chr2 5095001 5107000 11999
Deletion Chr12 5237001 5251000 13999 3
Deletion Chr8 5289001 5320000 30999 6
Deletion Chr8 5417001 5445000 27999 4
Deletion Chr11 5538864 5538881 17
Deletion Chr3 5542081 5542082 1
Deletion Chr4 5886001 5901000 14999 OsKitaake04g029500
Deletion Chr3 6081001 6107000 25999 2
Deletion Chr5 6190001 6210000 19999 OsKitaake05g064100
Deletion Chr7 6218001 6235000 16999 2
Deletion Chr9 6266001 6281000 14999 3
Deletion Chr4 6320001 6335000 14999 OsKitaake04g031700
Deletion Chr5 6739194 6739202 8
Deletion Chr5 6781001 6799000 17999 2
Deletion Chr9 6935001 6954000 18999 OsKitaake09g039700
Deletion Chr7 7332001 7345000 12999
Deletion Chr10 7382001 7393000 10999 OsKitaake10g048500
Deletion Chr2 7437001 7450000 12999
Deletion Chr7 7540001 7559000 18999
Deletion Chr6 7603001 7623000 19999
Deletion Chr8 7855001 7877000 21999 OsKitaake08g072300
Deletion Chr5 7963001 7980000 16999 3
Deletion Chr6 8514001 8522000 7999 OsKitaake06g105800
Deletion Chr4 8931001 8946000 14999 OsKitaake04g046100
Deletion Chr2 9033001 9050000 16999
Deletion Chr7 9052001 9067000 14999 OsKitaake07g095000
Deletion Chr8 9059877 9059878 1
Deletion Chr2 9321001 9347000 25999 2
Deletion Chr11 9459001 9484000 24999 3
Deletion Chr5 9575001 9590000 14999
Deletion Chr4 10033131 10033132 1
Deletion Chr4 10189001 10216000 26999
Deletion Chr12 10439001 10453000 13999 3
Deletion Chr4 10449220 10449365 145
Deletion Chr2 10488001 10535000 46999 3
Deletion Chr9 11101001 11113000 11999
Deletion Chr1 11183001 11202000 18999 OsKitaake01g137600
Deletion Chr12 11337001 11404000 66999 OsKitaake12g102301
Deletion Chr2 11361001 11379000 17999
Deletion Chr8 11431001 11491000 59999 3
Deletion Chr12 11434001 11465000 30999 OsKitaake12g102401
Deletion Chr6 11481001 11496000 14999 OsKitaake06g126800
Deletion Chr4 11605373 11605378 5
Deletion Chr11 11623001 11651000 27999
Deletion Chr2 11744001 11755000 10999
Deletion Chr5 11814001 11832000 17999 OsKitaake05g096700
Deletion Chr2 11871288 11871296 8
Deletion Chr11 11990238 11990239 1 OsKitaake11g111200
Deletion Chr12 12165001 12187000 21999
Deletion Chr9 12294001 12310000 15999 OsKitaake09g080400
Deletion Chr5 12500001 12577000 76999 OsKitaake05g098300
Deletion Chr11 12529001 12537000 7999
Deletion Chr9 12606001 12625000 18999 OsKitaake09g083200
Deletion Chr2 12741001 12759000 17999 3
Deletion Chr2 12841001 12848000 6999 OsKitaake02g143900
Deletion Chr12 12994001 13096000 101999 3
Deletion Chr11 13065001 13078000 12999
Deletion Chr9 13117001 13126000 8999
Deletion Chr10 13134001 13155000 20999
Deletion Chr8 13200001 13264000 63999
Deletion Chr7 13262001 13271000 8999 OsKitaake07g117000
Deletion Chr6 13281911 13281913 2
Deletion Chr9 13355001 13375000 19999 2
Deletion Chr11 13408001 13430000 21999 2
Deletion Chr5 13820001 13840000 19999 4
Deletion Chr9 14135001 14167000 31999 2
Deletion Chr7 14188001 14205000 16999
Deletion Chr1 14642001 14697000 54999 2
Deletion Chr2 14786001 14800000 13999
Deletion Chr2 14972001 14982000 9999
Deletion Chr10 14975001 14992000 16999 OsKitaake10g093900
Deletion Chr6 14984001 15002000 17999
Deletion Chr11 15019001 15036000 16999 OsKitaake11g123300
Deletion Chr10 15272595 15272599 4
Deletion Chr2 15367001 15381000 13999
Deletion Chr3 15541001 15580000 38999
Deletion Chr6 15978001 15992000 13999
Deletion Chr2 16065001 16111000 45999 OsKitaake02g166300
Deletion Chr12 16145001 16164000 18999
Deletion Chr1 16192928 16192933 5
Deletion Chr8 16564001 16583000 18999 4
Deletion Chr5 16789001 16806000 16999 OsKitaake05g128600
Deletion Chr8 16816001 16827000 10999
Deletion Chr9 16971001 16982000 10999 OsKitaake09g125800
Deletion Chr5 17066001 17094000 27999 OsKitaake05g131400
Deletion Chr1 17227001 17244000 16999
Deletion Chr10 17367001 17376000 8999
Deletion Chr1 17469001 17496000 26999 OsKitaake01g179300
Deletion Chr10 17474001 17502000 27999 OsKitaake10g119300
Deletion Chr2 17540001 17557000 16999 OsKitaake02g176100
Deletion Chr1 17543001 17557000 13999
Deletion Chr6 17565001 17584000 18999 2
Deletion Chr11 17717882 17718008 126
Deletion Chr6 17731001 17754000 22999 OsKitaake06g163600
Deletion Chr12 17811001 17827000 15999
Deletion Chr8 18083001 18098000 14999 OsKitaake08g134500
Deletion Chr12 18357001 18379000 21999 OsKitaake12g134200
Deletion Chr10 18579001 18592000 12999
Deletion Chr11 18658001 18674000 15999 3
Deletion Chr2 18692001 18707000 14999 OsKitaake02g184000
Deletion Chr6 18899197 18899198 1
Deletion Chr12 19267001 19283000 15999 OsKitaake12g144200
Deletion Chr4 19342001 19365000 22999 OsKitaake04g098600
Deletion Chr6 19509001 19519000 9999
Deletion Chr4 19631001 19665000 33999 2
Deletion Chr1 19673001 19684000 10999 OsKitaake01g196000
Deletion Chr8 19684001 19719000 34999 2
Deletion Chr3 19992001 20030000 37999 OsKitaake03g230101
Deletion Chr11 20143872 20143877 5
Deletion Chr3 20270001 20286000 15999
Deletion Chr12 20649001 20670000 20999 3
Deletion Chr2 20740001 20809000 68999 4
Deletion Chr9 20744727 20744733 6 OsKitaake09g176400
Deletion Chr3 20879001 20892000 12999 2
Deletion Chr6 21349001 21361000 11999
Deletion Chr1 21556001 21570000 13999
Deletion Chr2 21557001 21574000 16999 3
Deletion Chr12 21614001 21631000 16999
Deletion Chr3 21923001 21944000 20999 3
Deletion Chr3 22303001 22324000 20999 3
Deletion Chr2 22463001 22479000 15999 OsKitaake02g217600
Deletion Chr12 22779001 22804000 24999 4
Deletion Chr11 23023001 23039000 15999 OsKitaake11g182800
Deletion Chr1 23257001 23271000 13999 OsKitaake01g222400
Deletion Chr12 23800001 23820000 19999 3
Deletion Chr12 23831001 23869000 37999 6
Deletion Chr1 24039001 24056000 16999 OsKitaake01g231100
Deletion Chr3 24058001 24068000 9999 OsKitaake03g257300
Deletion Chr12 24384001 24397000 12999 OsKitaake12g196500
Deletion Chr2 24404001 24433000 28999 OsKitaake02g242700
Deletion Chr8 24970001 24999000 28999 OsKitaake08g194166
Deletion Chr3 25112001 25132000 19999 OsKitaake03g266200
Deletion Chr11 25208510 25208512 2
Deletion Chr3 25212001 25235000 22999 OsKitaake03g266800
Deletion Chr12 25471001 25486000 14999 7
Deletion Chr8 25485001 25502000 16999 5
Deletion Chr7 25559289 25559295 6
Deletion Chr6 25603796 25603805 9
Deletion Chr11 25873001 25889000 15999 OsKitaake11g208100
Deletion Chr11 26228547 26228549 2
Deletion Chr7 26330001 26369000 38999 8
Deletion Chr6 26429001 26449000 19999 2
Deletion Chr7 26842001 26861000 18999 2
Deletion Chr4 27397469 27397470 1
Deletion Chr8 27889001 27900000 10999 OsKitaake08g233400
Deletion Chr6 27916001 27933000 16999 OsKitaake06g253400
Deletion Chr8 28148001 28162000 13999 4
Deletion Chr3 28182001 28222000 39999 5
Deletion Chr6 28334001 28350000 15999
Deletion Chr3 28588001 28611000 22999 2
Deletion Chr3 28650001 28668000 17999
Deletion Chr5 29399001 29415000 15999
Deletion Chr5 29512449 29512452 3 OsKitaake05g280400
Deletion Chr3 29874001 29886000 11999 OsKitaake03g312500
Deletion Chr5 30037001 30052000 14999 OsKitaake05g288400
Deletion Chr3 30593001 30610000 16999 OsKitaake03g321500
Deletion Chr6 30826001 30836000 9999 OsKitaake06g291700
Deletion Chr3 31014001 31057000 42999 3
Deletion Chr1 31141292 31141308 16
Deletion Chr1 33455001 33468000 12999 OsKitaake01g342500
Deletion Chr2 33973245 33973246 1
Deletion Chr4 34073001 34086000 12999
Deletion Chr2 35028789 35028790 1
Deletion Chr2 36254001 36273000 18999 2
Deletion Chr1 42307001 42329000 21999 OsKitaake01g466400
Deletion Chr1 43418001 43433000 14999 3

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36334974 36334976 1
Insertion Chr9 12736075 12736078 2
Insertion Chr9 14509920 14509923 2
Insertion Chr1 9692959 9692961 1
Insertion Chr8 9073214 9073218 3
Insertion Chr12 20083289 20083291 1 OsKitaake12g149751

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 6753137 6788592
Inversion Chr5 6753141 6796662
Inversion Chr7 8820935 8822434
Inversion Chr3 16051372 16053524
Inversion Chr2 23129125 23269423 2
Inversion Chr2 23269423 23271193 OsKitaake02g227600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 20006797 Chr3 30086947
Translocation Chr5 20008195 Chr3 30086949
Translocation Chr6 21497459 Chr2 23162861 OsKitaake02g226600
Translocation Chr6 21497464 Chr2 23163169 OsKitaake02g226600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6701369	C-T	Hetero	INTERGENIC
SBS	Chr1	17997586	G-A	Hetero	INTERGENIC
SBS	Chr1	18810041	A-G	Hetero	INTERGENIC
SBS	Chr1	22573624	A-T	Hetero	INTERGENIC
SBS	Chr1	39650037	G-C	Homo	UTR_3_PRIME
SBS	Chr1	43495746	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	35619523	T-A	Hetero	INTERGENIC
SBS	Chr3	4381231	C-A	Hetero	INTERGENIC
SBS	Chr3	34566393	C-T	Homo	INTERGENIC
SBS	Chr3	34969354	C-A	Homo	INTERGENIC
SBS	Chr3	34969355	C-A	Homo	INTERGENIC
SBS	Chr4	15779891	C-A	Hetero	INTERGENIC
SBS	Chr4	23406716	T-A	Hetero	INTERGENIC
SBS	Chr5	1572469	C-A	Hetero	INTERGENIC
SBS	Chr5	12325671	C-T	Hetero	START_GAINED
SBS	Chr5	19433749	G-A	Homo	INTERGENIC
SBS	Chr5	20453670	T-C	Homo	INTERGENIC
SBS	Chr5	29419541	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	29547774	G-A	Homo	INTERGENIC
SBS	Chr6	8078946	G-A	Homo	INTERGENIC
SBS	Chr6	9697393	G-A	Hetero	INTERGENIC
SBS	Chr6	21935503	T-G	Hetero	UTR_5_PRIME
SBS	Chr6	23323184	C-A	Hetero	INTERGENIC
SBS	Chr6	26209763	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	26209764	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g234600
SBS	Chr6	26430622	C-G	Hetero	INTERGENIC
SBS	Chr7	8481715	T-C	Hetero	INTERGENIC
SBS	Chr7	9701754	C-G	Hetero	INTERGENIC
SBS	Chr7	11439964	G-A	Hetero	INTERGENIC
SBS	Chr7	25252394	G-A	Hetero	INTERGENIC
SBS	Chr8	4078623	C-A	Hetero	INTERGENIC
SBS	Chr9	4577601	A-G	Hetero	INTERGENIC
SBS	Chr11	15113766	C-T	Hetero	INTERGENIC
SBS	Chr11	25180305	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	163001	190000	26999	7
Deletion	Chr3	172001	186000	13999	4
Deletion	Chr3	538001	557000	18999	3
Deletion	Chr2	597001	612000	14999	OsKitaake02g009000
Deletion	Chr10	960001	975000	14999
Deletion	Chr9	1142001	1163000	20999	OsKitaake09g006900
Deletion	Chr2	1639001	1649000	9999	OsKitaake02g025800
Deletion	Chr7	1646001	1671000	24999	7
Deletion	Chr11	1660001	1673000	12999	4
Deletion	Chr3	1674001	1691000	16999	OsKitaake03g023750
Deletion	Chr12	1737001	1747000	9999	OsKitaake12g026400
Deletion	Chr11	2225001	2237000	11999	OsKitaake11g032600
Deletion	Chr7	2644001	2656000	11999
Deletion	Chr3	3330001	3351000	20999	2
Deletion	Chr5	3371001	3390000	18999	2
Deletion	Chr5	3394001	3420000	25999	3
Deletion	Chr2	3443001	3454000	10999	OsKitaake02g050200
Deletion	Chr1	3644001	3659000	14999	OsKitaake01g049000
Deletion	Chr8	3672001	3692000	19999	OsKitaake08g041100
Deletion	Chr9	3704001	3734000	29999	OsKitaake09g019400
Deletion	Chr5	3749001	3758000	8999	OsKitaake05g044900
Deletion	Chr7	3945001	3959000	13999
Deletion	Chr8	4600001	4611000	10999	OsKitaake08g052000
Deletion	Chr7	4787001	4812000	24999	2
Deletion	Chr4	4870001	4904000	33999	3
Deletion	Chr6	4900001	4937000	36999	3
Deletion	Chr2	5095001	5107000	11999
Deletion	Chr12	5237001	5251000	13999	3
Deletion	Chr8	5289001	5320000	30999	6
Deletion	Chr8	5417001	5445000	27999	4
Deletion	Chr11	5538864	5538881	17
Deletion	Chr3	5542081	5542082	1
Deletion	Chr4	5886001	5901000	14999	OsKitaake04g029500
Deletion	Chr3	6081001	6107000	25999	2
Deletion	Chr5	6190001	6210000	19999	OsKitaake05g064100
Deletion	Chr7	6218001	6235000	16999	2
Deletion	Chr9	6266001	6281000	14999	3
Deletion	Chr4	6320001	6335000	14999	OsKitaake04g031700
Deletion	Chr5	6739194	6739202	8
Deletion	Chr5	6781001	6799000	17999	2
Deletion	Chr9	6935001	6954000	18999	OsKitaake09g039700
Deletion	Chr7	7332001	7345000	12999
Deletion	Chr10	7382001	7393000	10999	OsKitaake10g048500
Deletion	Chr2	7437001	7450000	12999
Deletion	Chr7	7540001	7559000	18999
Deletion	Chr6	7603001	7623000	19999
Deletion	Chr8	7855001	7877000	21999	OsKitaake08g072300
Deletion	Chr5	7963001	7980000	16999	3
Deletion	Chr6	8514001	8522000	7999	OsKitaake06g105800
Deletion	Chr4	8931001	8946000	14999	OsKitaake04g046100
Deletion	Chr2	9033001	9050000	16999
Deletion	Chr7	9052001	9067000	14999	OsKitaake07g095000
Deletion	Chr8	9059877	9059878	1
Deletion	Chr2	9321001	9347000	25999	2
Deletion	Chr11	9459001	9484000	24999	3
Deletion	Chr5	9575001	9590000	14999
Deletion	Chr4	10033131	10033132	1
Deletion	Chr4	10189001	10216000	26999
Deletion	Chr12	10439001	10453000	13999	3
Deletion	Chr4	10449220	10449365	145
Deletion	Chr2	10488001	10535000	46999	3
Deletion	Chr9	11101001	11113000	11999
Deletion	Chr1	11183001	11202000	18999	OsKitaake01g137600
Deletion	Chr12	11337001	11404000	66999	OsKitaake12g102301
Deletion	Chr2	11361001	11379000	17999
Deletion	Chr8	11431001	11491000	59999	3
Deletion	Chr12	11434001	11465000	30999	OsKitaake12g102401
Deletion	Chr6	11481001	11496000	14999	OsKitaake06g126800
Deletion	Chr4	11605373	11605378	5
Deletion	Chr11	11623001	11651000	27999
Deletion	Chr2	11744001	11755000	10999
Deletion	Chr5	11814001	11832000	17999	OsKitaake05g096700
Deletion	Chr2	11871288	11871296	8
Deletion	Chr11	11990238	11990239	1	OsKitaake11g111200
Deletion	Chr12	12165001	12187000	21999
Deletion	Chr9	12294001	12310000	15999	OsKitaake09g080400
Deletion	Chr5	12500001	12577000	76999	OsKitaake05g098300
Deletion	Chr11	12529001	12537000	7999
Deletion	Chr9	12606001	12625000	18999	OsKitaake09g083200
Deletion	Chr2	12741001	12759000	17999	3
Deletion	Chr2	12841001	12848000	6999	OsKitaake02g143900
Deletion	Chr12	12994001	13096000	101999	3
Deletion	Chr11	13065001	13078000	12999
Deletion	Chr9	13117001	13126000	8999
Deletion	Chr10	13134001	13155000	20999
Deletion	Chr8	13200001	13264000	63999
Deletion	Chr7	13262001	13271000	8999	OsKitaake07g117000
Deletion	Chr6	13281911	13281913	2
Deletion	Chr9	13355001	13375000	19999	2
Deletion	Chr11	13408001	13430000	21999	2
Deletion	Chr5	13820001	13840000	19999	4
Deletion	Chr9	14135001	14167000	31999	2
Deletion	Chr7	14188001	14205000	16999
Deletion	Chr1	14642001	14697000	54999	2
Deletion	Chr2	14786001	14800000	13999
Deletion	Chr2	14972001	14982000	9999
Deletion	Chr10	14975001	14992000	16999	OsKitaake10g093900
Deletion	Chr6	14984001	15002000	17999
Deletion	Chr11	15019001	15036000	16999	OsKitaake11g123300
Deletion	Chr10	15272595	15272599	4
Deletion	Chr2	15367001	15381000	13999
Deletion	Chr3	15541001	15580000	38999
Deletion	Chr6	15978001	15992000	13999
Deletion	Chr2	16065001	16111000	45999	OsKitaake02g166300
Deletion	Chr12	16145001	16164000	18999
Deletion	Chr1	16192928	16192933	5
Deletion	Chr8	16564001	16583000	18999	4
Deletion	Chr5	16789001	16806000	16999	OsKitaake05g128600
Deletion	Chr8	16816001	16827000	10999
Deletion	Chr9	16971001	16982000	10999	OsKitaake09g125800
Deletion	Chr5	17066001	17094000	27999	OsKitaake05g131400
Deletion	Chr1	17227001	17244000	16999
Deletion	Chr10	17367001	17376000	8999
Deletion	Chr1	17469001	17496000	26999	OsKitaake01g179300
Deletion	Chr10	17474001	17502000	27999	OsKitaake10g119300
Deletion	Chr2	17540001	17557000	16999	OsKitaake02g176100
Deletion	Chr1	17543001	17557000	13999
Deletion	Chr6	17565001	17584000	18999	2
Deletion	Chr11	17717882	17718008	126
Deletion	Chr6	17731001	17754000	22999	OsKitaake06g163600
Deletion	Chr12	17811001	17827000	15999
Deletion	Chr8	18083001	18098000	14999	OsKitaake08g134500
Deletion	Chr12	18357001	18379000	21999	OsKitaake12g134200
Deletion	Chr10	18579001	18592000	12999
Deletion	Chr11	18658001	18674000	15999	3
Deletion	Chr2	18692001	18707000	14999	OsKitaake02g184000
Deletion	Chr6	18899197	18899198	1
Deletion	Chr12	19267001	19283000	15999	OsKitaake12g144200
Deletion	Chr4	19342001	19365000	22999	OsKitaake04g098600
Deletion	Chr6	19509001	19519000	9999
Deletion	Chr4	19631001	19665000	33999	2
Deletion	Chr1	19673001	19684000	10999	OsKitaake01g196000
Deletion	Chr8	19684001	19719000	34999	2
Deletion	Chr3	19992001	20030000	37999	OsKitaake03g230101
Deletion	Chr11	20143872	20143877	5
Deletion	Chr3	20270001	20286000	15999
Deletion	Chr12	20649001	20670000	20999	3
Deletion	Chr2	20740001	20809000	68999	4
Deletion	Chr9	20744727	20744733	6	OsKitaake09g176400
Deletion	Chr3	20879001	20892000	12999	2
Deletion	Chr6	21349001	21361000	11999
Deletion	Chr1	21556001	21570000	13999
Deletion	Chr2	21557001	21574000	16999	3
Deletion	Chr12	21614001	21631000	16999
Deletion	Chr3	21923001	21944000	20999	3
Deletion	Chr3	22303001	22324000	20999	3
Deletion	Chr2	22463001	22479000	15999	OsKitaake02g217600
Deletion	Chr12	22779001	22804000	24999	4
Deletion	Chr11	23023001	23039000	15999	OsKitaake11g182800
Deletion	Chr1	23257001	23271000	13999	OsKitaake01g222400
Deletion	Chr12	23800001	23820000	19999	3
Deletion	Chr12	23831001	23869000	37999	6
Deletion	Chr1	24039001	24056000	16999	OsKitaake01g231100
Deletion	Chr3	24058001	24068000	9999	OsKitaake03g257300
Deletion	Chr12	24384001	24397000	12999	OsKitaake12g196500
Deletion	Chr2	24404001	24433000	28999	OsKitaake02g242700
Deletion	Chr8	24970001	24999000	28999	OsKitaake08g194166
Deletion	Chr3	25112001	25132000	19999	OsKitaake03g266200
Deletion	Chr11	25208510	25208512	2
Deletion	Chr3	25212001	25235000	22999	OsKitaake03g266800
Deletion	Chr12	25471001	25486000	14999	7
Deletion	Chr8	25485001	25502000	16999	5
Deletion	Chr7	25559289	25559295	6
Deletion	Chr6	25603796	25603805	9
Deletion	Chr11	25873001	25889000	15999	OsKitaake11g208100
Deletion	Chr11	26228547	26228549	2
Deletion	Chr7	26330001	26369000	38999	8
Deletion	Chr6	26429001	26449000	19999	2
Deletion	Chr7	26842001	26861000	18999	2
Deletion	Chr4	27397469	27397470	1
Deletion	Chr8	27889001	27900000	10999	OsKitaake08g233400
Deletion	Chr6	27916001	27933000	16999	OsKitaake06g253400
Deletion	Chr8	28148001	28162000	13999	4
Deletion	Chr3	28182001	28222000	39999	5
Deletion	Chr6	28334001	28350000	15999
Deletion	Chr3	28588001	28611000	22999	2
Deletion	Chr3	28650001	28668000	17999
Deletion	Chr5	29399001	29415000	15999
Deletion	Chr5	29512449	29512452	3	OsKitaake05g280400
Deletion	Chr3	29874001	29886000	11999	OsKitaake03g312500
Deletion	Chr5	30037001	30052000	14999	OsKitaake05g288400
Deletion	Chr3	30593001	30610000	16999	OsKitaake03g321500
Deletion	Chr6	30826001	30836000	9999	OsKitaake06g291700
Deletion	Chr3	31014001	31057000	42999	3
Deletion	Chr1	31141292	31141308	16
Deletion	Chr1	33455001	33468000	12999	OsKitaake01g342500
Deletion	Chr2	33973245	33973246	1
Deletion	Chr4	34073001	34086000	12999
Deletion	Chr2	35028789	35028790	1
Deletion	Chr2	36254001	36273000	18999	2
Deletion	Chr1	42307001	42329000	21999	OsKitaake01g466400
Deletion	Chr1	43418001	43433000	14999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6753137	6788592
Inversion	Chr5	6753141	6796662
Inversion	Chr7	8820935	8822434
Inversion	Chr3	16051372	16053524
Inversion	Chr2	23129125	23269423	2
Inversion	Chr2	23269423	23271193	OsKitaake02g227600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes