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Mutant Information

Mutant Name	FN1472-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1472-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15593600 C-T Hetero INTERGENIC
SBS Chr1 16976164 G-A Hetero INTERGENIC
SBS Chr1 38079986 T-A Homo INTRON
SBS Chr1 39822062 G-A Homo INTERGENIC
SBS Chr2 7662716 T-G Hetero INTERGENIC
SBS Chr2 24780163 T-A Homo INTERGENIC
SBS Chr2 27174233 A-G Homo INTERGENIC
SBS Chr3 7951523 A-G Homo INTRON
SBS Chr3 9230640 G-A Homo INTERGENIC
SBS Chr3 16011346 T-G Homo INTERGENIC
SBS Chr3 17489587 T-C Homo INTERGENIC
SBS Chr4 27795643 T-A Homo INTERGENIC
SBS Chr4 33397914 G-A Hetero INTERGENIC
SBS Chr5 2617818 A-T Homo INTERGENIC
SBS Chr5 24492087 C-A Hetero INTRON
SBS Chr5 27039415 C-T Homo SYNONYMOUS_CODING
SBS Chr7 8277150 C-G Hetero INTERGENIC
SBS Chr7 12974475 A-T Homo INTERGENIC
SBS Chr8 4357202 C-A Hetero INTERGENIC
SBS Chr8 7210905 G-A Hetero INTERGENIC
SBS Chr8 16119141 C-T Homo INTERGENIC
SBS Chr9 756059 G-A Hetero INTERGENIC
SBS Chr9 3986299 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g021600
SBS Chr9 13626472 C-T Homo INTERGENIC
SBS Chr10 482653 T-A Hetero INTERGENIC
SBS Chr10 2862766 G-A Hetero INTERGENIC
SBS Chr11 10551778 G-C Hetero INTRON
SBS Chr11 15295156 C-T Homo INTERGENIC
SBS Chr11 26836348 C-G Homo INTERGENIC
SBS Chr12 11248680 C-G Hetero INTERGENIC
SBS Chr12 19547093 G-A Hetero INTERGENIC

Deletions: 117

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 750001 768000 17999 2
Deletion Chr2 818889 818891 2
Deletion Chr8 910001 941000 30999 2
Deletion Chr2 931001 939000 7999 OsKitaake02g013300
Deletion Chr3 1082001 1119000 36999 4
Deletion Chr2 1302001 1312000 9999 2
Deletion Chr5 1364001 1382000 17999 OsKitaake05g017100
Deletion Chr11 1431001 1442000 10999 4
Deletion Chr2 1628001 1652000 23999 4
Deletion Chr1 1853001 1874000 20999 2
Deletion Chr3 2520001 2552000 31999 5
Deletion Chr1 2612001 2633000 20999 OsKitaake01g033300
Deletion Chr5 2883001 2900000 16999 8
Deletion Chr7 3371001 3381000 9999 OsKitaake07g042600
Deletion Chr2 3446001 3453000 6999 OsKitaake02g050200
Deletion Chr9 3495001 3515000 19999 2
Deletion Chr1 3640001 3659000 18999 2
Deletion Chr5 4000001 4008000 7999 OsKitaake05g048500
Deletion Chr6 4186001 4209000 22999 5
Deletion Chr1 4470001 4482000 11999 OsKitaake01g059500
Deletion Chr8 4601001 4623000 21999 OsKitaake08g052000
Deletion Chr2 4731001 4744000 12999 3
Deletion Chr12 4853001 4883000 29999 4
Deletion Chr5 5231001 5249000 17999 4
Deletion Chr7 5986001 6003000 16999 OsKitaake07g072200
Deletion Chr6 6021001 6038000 16999 3
Deletion Chr3 6092001 6110000 17999 OsKitaake03g087400
Deletion Chr2 6211001 6235000 23999 3
Deletion Chr1 6219001 6229000 9999 OsKitaake01g079000
Deletion Chr11 8084001 8093000 8999 2
Deletion Chr6 8513001 8532000 18999 2
Deletion Chr3 9664001 9693000 28999 4
Deletion Chr10 10482001 10498000 15999 OsKitaake10g061300
Deletion Chr7 11075001 11087000 11999 OsKitaake07g104332
Deletion Chr7 12537001 12562000 24999 3
Deletion Chr7 12676001 12690000 13999 2
Deletion Chr5 12685001 12691000 5999 OsKitaake05g098900
Deletion Chr1 13460001 13471000 10999 OsKitaake01g156600
Deletion Chr4 14175001 14183000 7999 OsKitaake04g067900
Deletion Chr9 14233001 14255000 21999 2
Deletion Chr1 14674001 14694000 19999 OsKitaake01g166200
Deletion Chr8 14685001 14789000 103999 4
Deletion Chr9 14826001 14925000 98999 11
Deletion Chr10 15182001 15195000 12999 3
Deletion Chr9 15280001 15319000 38999 10
Deletion Chr7 15569001 15581000 11999 2
Deletion Chr2 16075001 16118000 42999 OsKitaake02g166300
Deletion Chr2 16309001 16322000 12999 OsKitaake02g167700
Deletion Chr3 16310593 16310604 11
Deletion Chr7 16617823 16617825 2
Deletion Chr1 16661001 16683000 21999 OsKitaake01g177400
Deletion Chr5 16787001 16808000 20999 OsKitaake05g128600
Deletion Chr2 17068472 17068477 5
Deletion Chr12 17160001 17179000 18999 2
Deletion Chr4 17414001 17436000 21999 4
Deletion Chr10 17477001 17504000 26999 OsKitaake10g119300
Deletion Chr10 17551001 17580000 28999 OsKitaake10g120000
Deletion Chr6 18350001 18380000 29999 OsKitaake06g168100
Deletion Chr10 18506001 18541000 34999 7
Deletion Chr10 19275001 19303000 27999 5
Deletion Chr4 20711001 20725000 13999 3
Deletion Chr8 21300001 21310000 9999 OsKitaake08g159900
Deletion Chr4 21322001 21345000 22999 4
Deletion Chr9 21674001 21700000 25999 4
Deletion Chr10 21719001 21748000 28999 6
Deletion Chr2 21902001 21912000 9999
Deletion Chr9 22339001 22355000 15999 2
Deletion Chr11 22570001 22581000 10999 OsKitaake11g179100
Deletion Chr10 22684001 22701000 16999 OsKitaake10g187800
Deletion Chr2 22857001 22868000 10999 OsKitaake02g222400
Deletion Chr7 22888001 22925000 36999 3
Deletion Chr10 23136001 23166000 29999 OsKitaake10g195250
Deletion Chr1 23254001 23272000 17999 OsKitaake01g222400
Deletion Chr1 23733001 23778000 44999 4
Deletion Chr4 23774001 23783000 8999 OsKitaake04g150400
Deletion Chr6 23785001 23810000 24999 5
Deletion Chr1 23944171 23944172 1
Deletion Chr12 24253001 24265000 11999 OsKitaake12g195200
Deletion Chr2 24405001 24429000 23999
Deletion Chr3 24488001 24498000 9999 OsKitaake03g261900
Deletion Chr11 26029001 26048000 18999 2
Deletion Chr8 26354001 26367000 12999 2
Deletion Chr1 27238001 27254000 15999 3
Deletion Chr8 27327001 27342000 14999 4
Deletion Chr2 27594001 27622000 27999 3
Deletion Chr4 27654001 27675000 20999 3
Deletion Chr6 27915001 27936000 20999 OsKitaake06g253400
Deletion Chr8 28134001 28161000 26999 4
Deletion Chr3 28185001 28195000 9999 OsKitaake03g291400
Deletion Chr7 28244001 28254000 9999 OsKitaake07g267000
Deletion Chr6 28539001 28552000 12999 2
Deletion Chr4 28729001 28744000 14999 OsKitaake04g215400
Deletion Chr11 28870001 28886000 15999 2
Deletion Chr6 29196001 29207000 10999 2
Deletion Chr3 29569001 29579000 9999 2
Deletion Chr2 30641964 30641971 7
Deletion Chr3 30869001 30884000 14999 2
Deletion Chr4 31415777 31415781 4
Deletion Chr4 31869001 31881000 11999 OsKitaake04g252800
Deletion Chr1 32501001 32509000 7999 OsKitaake01g329400
Deletion Chr2 32629001 32669000 39999 6
Deletion Chr4 33103001 33114000 10999 2
Deletion Chr4 33219958 33219961 3 OsKitaake04g270900
Deletion Chr1 33437001 33471000 33999 6
Deletion Chr2 33696001 33706000 9999 OsKitaake02g348500
Deletion Chr3 33946001 33975000 28999 3
Deletion Chr2 34165001 34190000 24999 4
Deletion Chr2 34516001 34524000 7999 OsKitaake02g358800
Deletion Chr2 34591001 34628000 36999 4
Deletion Chr3 34830001 34848000 17999 2
Deletion Chr1 35042367 35042372 5
Deletion Chr3 35335001 35346000 10999 OsKitaake03g387600
Deletion Chr1 38082001 38090000 7999 2
Deletion Chr1 38738346 38738396 50
Deletion Chr1 41002001 41017000 14999 OsKitaake01g447600
Deletion Chr1 41401001 41408000 6999 OsKitaake01g452100
Deletion Chr1 44231001 44239000 7999 OsKitaake01g494300

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 14407719 14407721 1

Inversions: 64

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 27143 27379 OsKitaake12g000100
Inversion Chr12 51338 51553
Inversion Chr12 480025 480203 OsKitaake12g005800
Inversion Chr7 1576590 1576775 OsKitaake07g021500
Inversion Chr2 3322950 3323093 OsKitaake02g048400
Inversion Chr6 3370345 3370509 OsKitaake06g047200
Inversion Chr11 3435180 3435321
Inversion Chr8 4252267 4252469 OsKitaake08g048100
Inversion Chr8 4342418 4342566 OsKitaake08g048900
Inversion Chr2 4796899 4797146 OsKitaake02g066300
Inversion Chr4 4821493 4821654
Inversion Chr10 4888261 4888536
Inversion Chr6 5403993 5404240
Inversion Chr1 5930492 5930766 OsKitaake01g075700
Inversion Chr12 6643868 6644074
Inversion Chr2 7299228 7299490
Inversion Chr11 7315592 7315956 OsKitaake11g083400
Inversion Chr6 7779248 7779516 OsKitaake06g099400
Inversion Chr4 7991636 7991877 OsKitaake04g041900
Inversion Chr3 9036991 9037232 OsKitaake03g124100
Inversion Chr11 9198708 9198835
Inversion Chr6 10055878 10056110
Inversion Chr11 10193839 10194287
Inversion Chr7 11677462 11677800
Inversion Chr2 11849131 11849235
Inversion Chr2 11872918 11873306
Inversion Chr1 12125466 12125695 OsKitaake01g147900
Inversion Chr3 13286661 13286827 OsKitaake03g177700
Inversion Chr9 13697685 13698013 OsKitaake09g092100
Inversion Chr8 13883562 14684636 OsKitaake08g115300
Inversion Chr8 13883568 14789221 OsKitaake08g115700
Inversion Chr9 13927862 13927973
Inversion Chr3 14637816 14638069 OsKitaake03g190000
Inversion Chr10 15141183 16064380
Inversion Chr10 15141191 16064391
Inversion Chr1 16699064 16699243
Inversion Chr9 17152541 17152863 OsKitaake09g128000
Inversion Chr3 17244222 17244417
Inversion Chr9 18159249 18159438 OsKitaake09g139900
Inversion Chr3 18380399 18380636
Inversion Chr3 19137849 19138017
Inversion Chr12 19172055 19172174 OsKitaake12g142501
Inversion Chr5 19577817 19578066 OsKitaake05g154700
Inversion Chr4 20162117 20162487 OsKitaake04g106500
Inversion Chr12 20260663 20261011 OsKitaake12g156800
Inversion Chr6 20287833 20288015 OsKitaake06g181200
Inversion Chr3 21104211 21104435
Inversion Chr3 21538768 21539007
Inversion Chr8 23137047 23137304
Inversion Chr1 23492503 23492811 OsKitaake01g225100
Inversion Chr2 24257598 24257752
Inversion Chr7 24493365 24493530
Inversion Chr3 24564967 24565212 OsKitaake03g262800
Inversion Chr3 24917904 24918156 OsKitaake03g265200
Inversion Chr7 28274445 28274656
Inversion Chr6 28734011 28734313
Inversion Chr3 28845428 28845612
Inversion Chr8 29264407 29264517
Inversion Chr1 30400746 30400932 OsKitaake01g300600
Inversion Chr2 30918426 30925767
Inversion Chr3 32767823 32768014 OsKitaake03g348000
Inversion Chr1 35666728 35667183 OsKitaake01g377500
Inversion Chr1 40207477 40207851
Inversion Chr1 43401579 43401711 OsKitaake01g480400

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 1094783 Chr2 8238182
Translocation Chr5 1094810 Chr2 8236329
Translocation Chr3 11876511 Chr2 13084133
Translocation Chr3 11876516 Chr2 13081197
Translocation Chr5 29102562 Chr4 30210892 OsKitaake05g275300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15593600	C-T	Hetero	INTERGENIC
SBS	Chr1	16976164	G-A	Hetero	INTERGENIC
SBS	Chr1	38079986	T-A	Homo	INTRON
SBS	Chr1	39822062	G-A	Homo	INTERGENIC
SBS	Chr2	7662716	T-G	Hetero	INTERGENIC
SBS	Chr2	24780163	T-A	Homo	INTERGENIC
SBS	Chr2	27174233	A-G	Homo	INTERGENIC
SBS	Chr3	7951523	A-G	Homo	INTRON
SBS	Chr3	9230640	G-A	Homo	INTERGENIC
SBS	Chr3	16011346	T-G	Homo	INTERGENIC
SBS	Chr3	17489587	T-C	Homo	INTERGENIC
SBS	Chr4	27795643	T-A	Homo	INTERGENIC
SBS	Chr4	33397914	G-A	Hetero	INTERGENIC
SBS	Chr5	2617818	A-T	Homo	INTERGENIC
SBS	Chr5	24492087	C-A	Hetero	INTRON
SBS	Chr5	27039415	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	8277150	C-G	Hetero	INTERGENIC
SBS	Chr7	12974475	A-T	Homo	INTERGENIC
SBS	Chr8	4357202	C-A	Hetero	INTERGENIC
SBS	Chr8	7210905	G-A	Hetero	INTERGENIC
SBS	Chr8	16119141	C-T	Homo	INTERGENIC
SBS	Chr9	756059	G-A	Hetero	INTERGENIC
SBS	Chr9	3986299	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g021600
SBS	Chr9	13626472	C-T	Homo	INTERGENIC
SBS	Chr10	482653	T-A	Hetero	INTERGENIC
SBS	Chr10	2862766	G-A	Hetero	INTERGENIC
SBS	Chr11	10551778	G-C	Hetero	INTRON
SBS	Chr11	15295156	C-T	Homo	INTERGENIC
SBS	Chr11	26836348	C-G	Homo	INTERGENIC
SBS	Chr12	11248680	C-G	Hetero	INTERGENIC
SBS	Chr12	19547093	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	750001	768000	17999	2
Deletion	Chr2	818889	818891	2
Deletion	Chr8	910001	941000	30999	2
Deletion	Chr2	931001	939000	7999	OsKitaake02g013300
Deletion	Chr3	1082001	1119000	36999	4
Deletion	Chr2	1302001	1312000	9999	2
Deletion	Chr5	1364001	1382000	17999	OsKitaake05g017100
Deletion	Chr11	1431001	1442000	10999	4
Deletion	Chr2	1628001	1652000	23999	4
Deletion	Chr1	1853001	1874000	20999	2
Deletion	Chr3	2520001	2552000	31999	5
Deletion	Chr1	2612001	2633000	20999	OsKitaake01g033300
Deletion	Chr5	2883001	2900000	16999	8
Deletion	Chr7	3371001	3381000	9999	OsKitaake07g042600
Deletion	Chr2	3446001	3453000	6999	OsKitaake02g050200
Deletion	Chr9	3495001	3515000	19999	2
Deletion	Chr1	3640001	3659000	18999	2
Deletion	Chr5	4000001	4008000	7999	OsKitaake05g048500
Deletion	Chr6	4186001	4209000	22999	5
Deletion	Chr1	4470001	4482000	11999	OsKitaake01g059500
Deletion	Chr8	4601001	4623000	21999	OsKitaake08g052000
Deletion	Chr2	4731001	4744000	12999	3
Deletion	Chr12	4853001	4883000	29999	4
Deletion	Chr5	5231001	5249000	17999	4
Deletion	Chr7	5986001	6003000	16999	OsKitaake07g072200
Deletion	Chr6	6021001	6038000	16999	3
Deletion	Chr3	6092001	6110000	17999	OsKitaake03g087400
Deletion	Chr2	6211001	6235000	23999	3
Deletion	Chr1	6219001	6229000	9999	OsKitaake01g079000
Deletion	Chr11	8084001	8093000	8999	2
Deletion	Chr6	8513001	8532000	18999	2
Deletion	Chr3	9664001	9693000	28999	4
Deletion	Chr10	10482001	10498000	15999	OsKitaake10g061300
Deletion	Chr7	11075001	11087000	11999	OsKitaake07g104332
Deletion	Chr7	12537001	12562000	24999	3
Deletion	Chr7	12676001	12690000	13999	2
Deletion	Chr5	12685001	12691000	5999	OsKitaake05g098900
Deletion	Chr1	13460001	13471000	10999	OsKitaake01g156600
Deletion	Chr4	14175001	14183000	7999	OsKitaake04g067900
Deletion	Chr9	14233001	14255000	21999	2
Deletion	Chr1	14674001	14694000	19999	OsKitaake01g166200
Deletion	Chr8	14685001	14789000	103999	4
Deletion	Chr9	14826001	14925000	98999	11
Deletion	Chr10	15182001	15195000	12999	3
Deletion	Chr9	15280001	15319000	38999	10
Deletion	Chr7	15569001	15581000	11999	2
Deletion	Chr2	16075001	16118000	42999	OsKitaake02g166300
Deletion	Chr2	16309001	16322000	12999	OsKitaake02g167700
Deletion	Chr3	16310593	16310604	11
Deletion	Chr7	16617823	16617825	2
Deletion	Chr1	16661001	16683000	21999	OsKitaake01g177400
Deletion	Chr5	16787001	16808000	20999	OsKitaake05g128600
Deletion	Chr2	17068472	17068477	5
Deletion	Chr12	17160001	17179000	18999	2
Deletion	Chr4	17414001	17436000	21999	4
Deletion	Chr10	17477001	17504000	26999	OsKitaake10g119300
Deletion	Chr10	17551001	17580000	28999	OsKitaake10g120000
Deletion	Chr6	18350001	18380000	29999	OsKitaake06g168100
Deletion	Chr10	18506001	18541000	34999	7
Deletion	Chr10	19275001	19303000	27999	5
Deletion	Chr4	20711001	20725000	13999	3
Deletion	Chr8	21300001	21310000	9999	OsKitaake08g159900
Deletion	Chr4	21322001	21345000	22999	4
Deletion	Chr9	21674001	21700000	25999	4
Deletion	Chr10	21719001	21748000	28999	6
Deletion	Chr2	21902001	21912000	9999
Deletion	Chr9	22339001	22355000	15999	2
Deletion	Chr11	22570001	22581000	10999	OsKitaake11g179100
Deletion	Chr10	22684001	22701000	16999	OsKitaake10g187800
Deletion	Chr2	22857001	22868000	10999	OsKitaake02g222400
Deletion	Chr7	22888001	22925000	36999	3
Deletion	Chr10	23136001	23166000	29999	OsKitaake10g195250
Deletion	Chr1	23254001	23272000	17999	OsKitaake01g222400
Deletion	Chr1	23733001	23778000	44999	4
Deletion	Chr4	23774001	23783000	8999	OsKitaake04g150400
Deletion	Chr6	23785001	23810000	24999	5
Deletion	Chr1	23944171	23944172	1
Deletion	Chr12	24253001	24265000	11999	OsKitaake12g195200
Deletion	Chr2	24405001	24429000	23999
Deletion	Chr3	24488001	24498000	9999	OsKitaake03g261900
Deletion	Chr11	26029001	26048000	18999	2
Deletion	Chr8	26354001	26367000	12999	2
Deletion	Chr1	27238001	27254000	15999	3
Deletion	Chr8	27327001	27342000	14999	4
Deletion	Chr2	27594001	27622000	27999	3
Deletion	Chr4	27654001	27675000	20999	3
Deletion	Chr6	27915001	27936000	20999	OsKitaake06g253400
Deletion	Chr8	28134001	28161000	26999	4
Deletion	Chr3	28185001	28195000	9999	OsKitaake03g291400
Deletion	Chr7	28244001	28254000	9999	OsKitaake07g267000
Deletion	Chr6	28539001	28552000	12999	2
Deletion	Chr4	28729001	28744000	14999	OsKitaake04g215400
Deletion	Chr11	28870001	28886000	15999	2
Deletion	Chr6	29196001	29207000	10999	2
Deletion	Chr3	29569001	29579000	9999	2
Deletion	Chr2	30641964	30641971	7
Deletion	Chr3	30869001	30884000	14999	2
Deletion	Chr4	31415777	31415781	4
Deletion	Chr4	31869001	31881000	11999	OsKitaake04g252800
Deletion	Chr1	32501001	32509000	7999	OsKitaake01g329400
Deletion	Chr2	32629001	32669000	39999	6
Deletion	Chr4	33103001	33114000	10999	2
Deletion	Chr4	33219958	33219961	3	OsKitaake04g270900
Deletion	Chr1	33437001	33471000	33999	6
Deletion	Chr2	33696001	33706000	9999	OsKitaake02g348500
Deletion	Chr3	33946001	33975000	28999	3
Deletion	Chr2	34165001	34190000	24999	4
Deletion	Chr2	34516001	34524000	7999	OsKitaake02g358800
Deletion	Chr2	34591001	34628000	36999	4
Deletion	Chr3	34830001	34848000	17999	2
Deletion	Chr1	35042367	35042372	5
Deletion	Chr3	35335001	35346000	10999	OsKitaake03g387600
Deletion	Chr1	38082001	38090000	7999	2
Deletion	Chr1	38738346	38738396	50
Deletion	Chr1	41002001	41017000	14999	OsKitaake01g447600
Deletion	Chr1	41401001	41408000	6999	OsKitaake01g452100
Deletion	Chr1	44231001	44239000	7999	OsKitaake01g494300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	27143	27379	OsKitaake12g000100
Inversion	Chr12	51338	51553
Inversion	Chr12	480025	480203	OsKitaake12g005800
Inversion	Chr7	1576590	1576775	OsKitaake07g021500
Inversion	Chr2	3322950	3323093	OsKitaake02g048400
Inversion	Chr6	3370345	3370509	OsKitaake06g047200
Inversion	Chr11	3435180	3435321
Inversion	Chr8	4252267	4252469	OsKitaake08g048100
Inversion	Chr8	4342418	4342566	OsKitaake08g048900
Inversion	Chr2	4796899	4797146	OsKitaake02g066300
Inversion	Chr4	4821493	4821654
Inversion	Chr10	4888261	4888536
Inversion	Chr6	5403993	5404240
Inversion	Chr1	5930492	5930766	OsKitaake01g075700
Inversion	Chr12	6643868	6644074
Inversion	Chr2	7299228	7299490
Inversion	Chr11	7315592	7315956	OsKitaake11g083400
Inversion	Chr6	7779248	7779516	OsKitaake06g099400
Inversion	Chr4	7991636	7991877	OsKitaake04g041900
Inversion	Chr3	9036991	9037232	OsKitaake03g124100
Inversion	Chr11	9198708	9198835
Inversion	Chr6	10055878	10056110
Inversion	Chr11	10193839	10194287
Inversion	Chr7	11677462	11677800
Inversion	Chr2	11849131	11849235
Inversion	Chr2	11872918	11873306
Inversion	Chr1	12125466	12125695	OsKitaake01g147900
Inversion	Chr3	13286661	13286827	OsKitaake03g177700
Inversion	Chr9	13697685	13698013	OsKitaake09g092100
Inversion	Chr8	13883562	14684636	OsKitaake08g115300
Inversion	Chr8	13883568	14789221	OsKitaake08g115700
Inversion	Chr9	13927862	13927973
Inversion	Chr3	14637816	14638069	OsKitaake03g190000
Inversion	Chr10	15141183	16064380
Inversion	Chr10	15141191	16064391
Inversion	Chr1	16699064	16699243
Inversion	Chr9	17152541	17152863	OsKitaake09g128000
Inversion	Chr3	17244222	17244417
Inversion	Chr9	18159249	18159438	OsKitaake09g139900
Inversion	Chr3	18380399	18380636
Inversion	Chr3	19137849	19138017
Inversion	Chr12	19172055	19172174	OsKitaake12g142501
Inversion	Chr5	19577817	19578066	OsKitaake05g154700
Inversion	Chr4	20162117	20162487	OsKitaake04g106500
Inversion	Chr12	20260663	20261011	OsKitaake12g156800
Inversion	Chr6	20287833	20288015	OsKitaake06g181200
Inversion	Chr3	21104211	21104435
Inversion	Chr3	21538768	21539007
Inversion	Chr8	23137047	23137304
Inversion	Chr1	23492503	23492811	OsKitaake01g225100
Inversion	Chr2	24257598	24257752
Inversion	Chr7	24493365	24493530
Inversion	Chr3	24564967	24565212	OsKitaake03g262800
Inversion	Chr3	24917904	24918156	OsKitaake03g265200
Inversion	Chr7	28274445	28274656
Inversion	Chr6	28734011	28734313
Inversion	Chr3	28845428	28845612
Inversion	Chr8	29264407	29264517
Inversion	Chr1	30400746	30400932	OsKitaake01g300600
Inversion	Chr2	30918426	30925767
Inversion	Chr3	32767823	32768014	OsKitaake03g348000
Inversion	Chr1	35666728	35667183	OsKitaake01g377500
Inversion	Chr1	40207477	40207851
Inversion	Chr1	43401579	43401711	OsKitaake01g480400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes