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Mutant Information

Mutant Name	FN1482-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1482-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 17

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 2959727 T-C Hetero UTR_3_PRIME
SBS Chr2 19637374 C-T Homo INTERGENIC
SBS Chr2 23642648 C-G Hetero INTERGENIC
SBS Chr3 18130402 A-G Hetero INTRON
SBS Chr4 7155194 T-A Hetero INTERGENIC
SBS Chr4 22209636 T-G Hetero INTERGENIC
SBS Chr4 23335965 T-C Hetero INTERGENIC
SBS Chr5 14758785 G-A Hetero INTERGENIC
SBS Chr5 17038801 T-C Homo INTERGENIC
SBS Chr6 15642442 A-G Homo INTERGENIC
SBS Chr7 12658955 C-T Hetero INTERGENIC
SBS Chr10 7501166 A-T Hetero INTERGENIC
SBS Chr10 14511777 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g090900
SBS Chr11 22319868 C-T Hetero INTERGENIC
SBS Chr12 5888467 T-A Homo INTERGENIC
SBS Chr12 7040369 T-A Homo INTERGENIC
SBS Chr12 18945893 T-C Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 60803 60804 1
Deletion Chr5 1323679 1323684 5
Deletion Chr5 1365001 1381000 15999 OsKitaake05g017100
Deletion Chr6 4192001 4202000 9999 OsKitaake06g058200
Deletion Chr12 5880645 5880656 11
Deletion Chr3 6095001 6102000 6999 OsKitaake03g087400
Deletion Chr9 10988146 10988150 4
Deletion Chr1 13457001 13478000 20999 3
Deletion Chr2 13994170 13994182 12
Deletion Chr5 16002768 16002874 106
Deletion Chr2 17695127 17695133 6
Deletion Chr2 18225594 18225596 2
Deletion Chr8 23135390 23135397 7
Deletion Chr2 24410001 24429000 18999
Deletion Chr4 24461001 24473000 11999
Deletion Chr12 24483001 24491000 7999 OsKitaake12g197500
Deletion Chr3 25935725 25935871 146
Deletion Chr1 26588174 26588175 1
Deletion Chr6 27920001 27934000 13999 OsKitaake06g253400
Deletion Chr3 27995001 28010000 14999 OsKitaake03g289900
Deletion Chr3 28576001 28596000 19999 OsKitaake03g296500
Deletion Chr1 42694001 42715000 20999 OsKitaake01g471000

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 28733168 28733171 2
Insertion Chr8 26682322 26682325 2
Insertion Chr12 682596 682599 2
Insertion Chr3 20033409 20033422 12
Insertion Chr4 10335753 10335755 1
Insertion Chr5 12424107 12424109 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 9337987 9960638
Inversion Chr4 9337997 9960657
Inversion Chr7 9940436 10442006

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	2959727	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	19637374	C-T	Homo	INTERGENIC
SBS	Chr2	23642648	C-G	Hetero	INTERGENIC
SBS	Chr3	18130402	A-G	Hetero	INTRON
SBS	Chr4	7155194	T-A	Hetero	INTERGENIC
SBS	Chr4	22209636	T-G	Hetero	INTERGENIC
SBS	Chr4	23335965	T-C	Hetero	INTERGENIC
SBS	Chr5	14758785	G-A	Hetero	INTERGENIC
SBS	Chr5	17038801	T-C	Homo	INTERGENIC
SBS	Chr6	15642442	A-G	Homo	INTERGENIC
SBS	Chr7	12658955	C-T	Hetero	INTERGENIC
SBS	Chr10	7501166	A-T	Hetero	INTERGENIC
SBS	Chr10	14511777	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g090900
SBS	Chr11	22319868	C-T	Hetero	INTERGENIC
SBS	Chr12	5888467	T-A	Homo	INTERGENIC
SBS	Chr12	7040369	T-A	Homo	INTERGENIC
SBS	Chr12	18945893	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	60803	60804	1
Deletion	Chr5	1323679	1323684	5
Deletion	Chr5	1365001	1381000	15999	OsKitaake05g017100
Deletion	Chr6	4192001	4202000	9999	OsKitaake06g058200
Deletion	Chr12	5880645	5880656	11
Deletion	Chr3	6095001	6102000	6999	OsKitaake03g087400
Deletion	Chr9	10988146	10988150	4
Deletion	Chr1	13457001	13478000	20999	3
Deletion	Chr2	13994170	13994182	12
Deletion	Chr5	16002768	16002874	106
Deletion	Chr2	17695127	17695133	6
Deletion	Chr2	18225594	18225596	2
Deletion	Chr8	23135390	23135397	7
Deletion	Chr2	24410001	24429000	18999
Deletion	Chr4	24461001	24473000	11999
Deletion	Chr12	24483001	24491000	7999	OsKitaake12g197500
Deletion	Chr3	25935725	25935871	146
Deletion	Chr1	26588174	26588175	1
Deletion	Chr6	27920001	27934000	13999	OsKitaake06g253400
Deletion	Chr3	27995001	28010000	14999	OsKitaake03g289900
Deletion	Chr3	28576001	28596000	19999	OsKitaake03g296500
Deletion	Chr1	42694001	42715000	20999	OsKitaake01g471000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9337987	9960638
Inversion	Chr4	9337997	9960657
Inversion	Chr7	9940436	10442006

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes