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Mutant Information

Mutant Name	FN1483-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1483-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 181396 C-A Homo INTERGENIC
SBS Chr1 181397 C-A Homo INTERGENIC
SBS Chr1 37956640 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g404800
SBS Chr2 11677003 G-A Hetero INTERGENIC
SBS Chr3 16459893 C-T Hetero INTERGENIC
SBS Chr5 5311574 G-T Hetero INTRON
SBS Chr5 17216413 G-A Hetero INTERGENIC
SBS Chr5 21018733 C-T Hetero INTERGENIC
SBS Chr6 14912305 G-A Homo INTERGENIC
SBS Chr6 17287692 T-A Homo INTRON
SBS Chr6 17632328 A-G Homo INTERGENIC
SBS Chr6 24701681 T-G Homo INTERGENIC
SBS Chr6 25112735 G-A Homo INTERGENIC
SBS Chr6 25112736 C-A Homo INTERGENIC
SBS Chr7 6420979 A-G Hetero INTERGENIC
SBS Chr7 8350222 T-C Hetero INTERGENIC
SBS Chr7 11531017 G-A Hetero INTERGENIC
SBS Chr7 15949976 A-G Hetero INTERGENIC
SBS Chr7 18236435 C-A Homo INTERGENIC
SBS Chr7 24033611 G-A Hetero INTERGENIC
SBS Chr7 28045783 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g264000
SBS Chr8 12430054 C-A Hetero INTERGENIC
SBS Chr9 3698682 C-T Hetero INTERGENIC
SBS Chr9 5468650 A-G Homo INTERGENIC
SBS Chr9 8877812 A-G Hetero INTERGENIC
SBS Chr9 20655251 C-T Homo NON_SYNONYMOUS_CODING OsKitaake09g175000
SBS Chr10 2822650 T-C Hetero INTERGENIC
SBS Chr10 6277752 G-A Hetero INTERGENIC
SBS Chr11 7161687 C-G Homo INTERGENIC
SBS Chr11 7843544 G-A Homo START_GAINED
SBS Chr11 11581235 G-A Hetero INTERGENIC
SBS Chr12 681268 G-T Hetero INTERGENIC
SBS Chr12 682571 G-C Hetero INTERGENIC
SBS Chr12 682698 G-A Hetero INTERGENIC
SBS Chr12 19253083 T-C Hetero INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 62771 63478 707
Deletion Chr1 9642001 9658000 15999 2
Deletion Chr10 11076085 11076087 2
Deletion Chr9 14725176 14725184 8
Deletion Chr4 19427001 19448000 20999 OsKitaake04g099601
Deletion Chr7 24036765 24036770 5
Deletion Chr7 24121099 24121100 1
Deletion Chr2 24412001 24426000 13999
Deletion Chr4 24460001 24475000 14999
Deletion Chr2 27200039 27200042 3
Deletion Chr3 28549001 28606000 56999 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30505650 30505653 2
Insertion Chr3 10594851 10594853 1
Insertion Chr4 10335753 10335755 1
Insertion Chr5 17866340 17866344 3
Insertion Chr9 10068067 10068069 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 4287866 4508083
Inversion Chr5 17212017 17370791 2
Inversion Chr5 17658359 18115931

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 4508068 Chr3 22160363
Translocation Chr7 4991969 Chr4 32844179 OsKitaake04g265400
Translocation Chr7 4992109 Chr4 32844172 OsKitaake04g265400
Translocation Chr5 6115575 Chr3 35978275 2
Translocation Chr5 6115636 Chr3 35978278 2
Translocation Chr8 15299817 Chr1 1514295

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	181396	C-A	Homo	INTERGENIC
SBS	Chr1	181397	C-A	Homo	INTERGENIC
SBS	Chr1	37956640	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g404800
SBS	Chr2	11677003	G-A	Hetero	INTERGENIC
SBS	Chr3	16459893	C-T	Hetero	INTERGENIC
SBS	Chr5	5311574	G-T	Hetero	INTRON
SBS	Chr5	17216413	G-A	Hetero	INTERGENIC
SBS	Chr5	21018733	C-T	Hetero	INTERGENIC
SBS	Chr6	14912305	G-A	Homo	INTERGENIC
SBS	Chr6	17287692	T-A	Homo	INTRON
SBS	Chr6	17632328	A-G	Homo	INTERGENIC
SBS	Chr6	24701681	T-G	Homo	INTERGENIC
SBS	Chr6	25112735	G-A	Homo	INTERGENIC
SBS	Chr6	25112736	C-A	Homo	INTERGENIC
SBS	Chr7	6420979	A-G	Hetero	INTERGENIC
SBS	Chr7	8350222	T-C	Hetero	INTERGENIC
SBS	Chr7	11531017	G-A	Hetero	INTERGENIC
SBS	Chr7	15949976	A-G	Hetero	INTERGENIC
SBS	Chr7	18236435	C-A	Homo	INTERGENIC
SBS	Chr7	24033611	G-A	Hetero	INTERGENIC
SBS	Chr7	28045783	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g264000
SBS	Chr8	12430054	C-A	Hetero	INTERGENIC
SBS	Chr9	3698682	C-T	Hetero	INTERGENIC
SBS	Chr9	5468650	A-G	Homo	INTERGENIC
SBS	Chr9	8877812	A-G	Hetero	INTERGENIC
SBS	Chr9	20655251	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g175000
SBS	Chr10	2822650	T-C	Hetero	INTERGENIC
SBS	Chr10	6277752	G-A	Hetero	INTERGENIC
SBS	Chr11	7161687	C-G	Homo	INTERGENIC
SBS	Chr11	7843544	G-A	Homo	START_GAINED
SBS	Chr11	11581235	G-A	Hetero	INTERGENIC
SBS	Chr12	681268	G-T	Hetero	INTERGENIC
SBS	Chr12	682571	G-C	Hetero	INTERGENIC
SBS	Chr12	682698	G-A	Hetero	INTERGENIC
SBS	Chr12	19253083	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	62771	63478	707
Deletion	Chr1	9642001	9658000	15999	2
Deletion	Chr10	11076085	11076087	2
Deletion	Chr9	14725176	14725184	8
Deletion	Chr4	19427001	19448000	20999	OsKitaake04g099601
Deletion	Chr7	24036765	24036770	5
Deletion	Chr7	24121099	24121100	1
Deletion	Chr2	24412001	24426000	13999
Deletion	Chr4	24460001	24475000	14999
Deletion	Chr2	27200039	27200042	3
Deletion	Chr3	28549001	28606000	56999	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4287866	4508083
Inversion	Chr5	17212017	17370791	2
Inversion	Chr5	17658359	18115931

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes