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Mutant Information

Mutant Name	FN1484-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1484-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13853332 T-C Homo INTERGENIC
SBS Chr1 21396581 C-T Homo INTERGENIC
SBS Chr1 26032171 T-A Hetero INTERGENIC
SBS Chr1 36706440 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 38598362 C-T Hetero INTERGENIC
SBS Chr2 1559848 C-T Homo INTERGENIC
SBS Chr2 14732999 G-A Homo INTERGENIC
SBS Chr2 23600619 A-G Homo INTERGENIC
SBS Chr2 23890921 A-T Hetero INTERGENIC
SBS Chr2 30150214 T-G Hetero INTRON
SBS Chr3 7389377 G-A Hetero INTRON
SBS Chr3 9990901 T-C Hetero INTERGENIC
SBS Chr3 16415326 A-G Hetero INTERGENIC
SBS Chr4 17390521 G-A Hetero INTERGENIC
SBS Chr4 18022466 C-T Hetero INTERGENIC
SBS Chr4 19589495 C-T Hetero INTERGENIC
SBS Chr4 36124928 A-T Hetero INTERGENIC
SBS Chr4 36885858 A-G Hetero INTERGENIC
SBS Chr5 841777 C-T Hetero INTERGENIC
SBS Chr5 6060072 C-T Hetero INTERGENIC
SBS Chr5 8697881 T-A Hetero INTERGENIC
SBS Chr5 8697882 A-T Hetero INTERGENIC
SBS Chr6 508646 A-G Hetero INTERGENIC
SBS Chr6 5663421 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g074700
SBS Chr6 9133964 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g109600
SBS Chr6 28653111 G-A Hetero INTERGENIC
SBS Chr7 8010242 C-T Hetero INTERGENIC
SBS Chr7 11378578 T-C Homo INTERGENIC
SBS Chr7 13468882 C-T Homo INTERGENIC
SBS Chr7 17198327 A-G Hetero INTERGENIC
SBS Chr7 18726496 T-C Hetero INTERGENIC
SBS Chr7 20308093 C-T Hetero INTERGENIC
SBS Chr7 25506461 T-C Homo INTERGENIC
SBS Chr8 25757182 G-C Homo INTERGENIC
SBS Chr9 3468441 G-A Hetero INTERGENIC
SBS Chr9 5050632 T-G Hetero INTERGENIC
SBS Chr9 8879606 C-A Hetero INTERGENIC
SBS Chr9 11734395 T-C Hetero INTRON
SBS Chr10 6787635 G-A Hetero INTERGENIC
SBS Chr10 19112847 G-T Hetero INTRON
SBS Chr10 19112849 A-T Hetero INTRON
SBS Chr11 1091275 A-T Homo INTERGENIC
SBS Chr11 11650688 C-T Homo INTERGENIC
SBS Chr11 16218754 A-T Homo INTERGENIC
SBS Chr11 16218793 A-G Homo INTERGENIC
SBS Chr11 25507684 A-T Hetero UTR_3_PRIME
SBS Chr11 28383017 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1044950 1044952 2
Deletion Chr1 4841001 4905000 63999 9
Deletion Chr1 4908001 4919000 10999 2
Deletion Chr6 7838572 7838783 211 OsKitaake06g100000
Deletion Chr7 8799038 8799045 7
Deletion Chr4 9882054 9882055 1
Deletion Chr1 10547084 10547092 8
Deletion Chr9 11557386 11557387 1 OsKitaake09g072300
Deletion Chr9 12126503 12126504 1 OsKitaake09g078400
Deletion Chr2 17347660 17347661 1 OsKitaake02g174200
Deletion Chr2 18332282 18332285 3
Deletion Chr5 24138544 24138547 3
Deletion Chr5 25330883 25330887 4 OsKitaake05g221000

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 13543372 13543375 2
Insertion Chr7 24524126 24524129 2
Insertion Chr8 12883947 12883950 2
Insertion Chr5 30231639 30231641 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 11778346 12176973 OsKitaake03g159800
Inversion Chr3 12151531 12177000 OsKitaake03g164700
Inversion Chr8 28176400 28436010 OsKitaake08g240700
Inversion Chr8 28176450 28436037 OsKitaake08g240700
Inversion Chr3 34194855 34632750 OsKitaake03g376700
Inversion Chr3 34194888 34632765 OsKitaake03g376700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13853332	T-C	Homo	INTERGENIC
SBS	Chr1	21396581	C-T	Homo	INTERGENIC
SBS	Chr1	26032171	T-A	Hetero	INTERGENIC
SBS	Chr1	36706440	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	38598362	C-T	Hetero	INTERGENIC
SBS	Chr2	1559848	C-T	Homo	INTERGENIC
SBS	Chr2	14732999	G-A	Homo	INTERGENIC
SBS	Chr2	23600619	A-G	Homo	INTERGENIC
SBS	Chr2	23890921	A-T	Hetero	INTERGENIC
SBS	Chr2	30150214	T-G	Hetero	INTRON
SBS	Chr3	7389377	G-A	Hetero	INTRON
SBS	Chr3	9990901	T-C	Hetero	INTERGENIC
SBS	Chr3	16415326	A-G	Hetero	INTERGENIC
SBS	Chr4	17390521	G-A	Hetero	INTERGENIC
SBS	Chr4	18022466	C-T	Hetero	INTERGENIC
SBS	Chr4	19589495	C-T	Hetero	INTERGENIC
SBS	Chr4	36124928	A-T	Hetero	INTERGENIC
SBS	Chr4	36885858	A-G	Hetero	INTERGENIC
SBS	Chr5	841777	C-T	Hetero	INTERGENIC
SBS	Chr5	6060072	C-T	Hetero	INTERGENIC
SBS	Chr5	8697881	T-A	Hetero	INTERGENIC
SBS	Chr5	8697882	A-T	Hetero	INTERGENIC
SBS	Chr6	508646	A-G	Hetero	INTERGENIC
SBS	Chr6	5663421	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g074700
SBS	Chr6	9133964	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g109600
SBS	Chr6	28653111	G-A	Hetero	INTERGENIC
SBS	Chr7	8010242	C-T	Hetero	INTERGENIC
SBS	Chr7	11378578	T-C	Homo	INTERGENIC
SBS	Chr7	13468882	C-T	Homo	INTERGENIC
SBS	Chr7	17198327	A-G	Hetero	INTERGENIC
SBS	Chr7	18726496	T-C	Hetero	INTERGENIC
SBS	Chr7	20308093	C-T	Hetero	INTERGENIC
SBS	Chr7	25506461	T-C	Homo	INTERGENIC
SBS	Chr8	25757182	G-C	Homo	INTERGENIC
SBS	Chr9	3468441	G-A	Hetero	INTERGENIC
SBS	Chr9	5050632	T-G	Hetero	INTERGENIC
SBS	Chr9	8879606	C-A	Hetero	INTERGENIC
SBS	Chr9	11734395	T-C	Hetero	INTRON
SBS	Chr10	6787635	G-A	Hetero	INTERGENIC
SBS	Chr10	19112847	G-T	Hetero	INTRON
SBS	Chr10	19112849	A-T	Hetero	INTRON
SBS	Chr11	1091275	A-T	Homo	INTERGENIC
SBS	Chr11	11650688	C-T	Homo	INTERGENIC
SBS	Chr11	16218754	A-T	Homo	INTERGENIC
SBS	Chr11	16218793	A-G	Homo	INTERGENIC
SBS	Chr11	25507684	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	28383017	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1044950	1044952	2
Deletion	Chr1	4841001	4905000	63999	9
Deletion	Chr1	4908001	4919000	10999	2
Deletion	Chr6	7838572	7838783	211	OsKitaake06g100000
Deletion	Chr7	8799038	8799045	7
Deletion	Chr4	9882054	9882055	1
Deletion	Chr1	10547084	10547092	8
Deletion	Chr9	11557386	11557387	1	OsKitaake09g072300
Deletion	Chr9	12126503	12126504	1	OsKitaake09g078400
Deletion	Chr2	17347660	17347661	1	OsKitaake02g174200
Deletion	Chr2	18332282	18332285	3
Deletion	Chr5	24138544	24138547	3
Deletion	Chr5	25330883	25330887	4	OsKitaake05g221000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11778346	12176973	OsKitaake03g159800
Inversion	Chr3	12151531	12177000	OsKitaake03g164700
Inversion	Chr8	28176400	28436010	OsKitaake08g240700
Inversion	Chr8	28176450	28436037	OsKitaake08g240700
Inversion	Chr3	34194855	34632750	OsKitaake03g376700
Inversion	Chr3	34194888	34632765	OsKitaake03g376700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes