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Mutant Information

Mutant Name	FN1485-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1485-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26660391 T-A Hetero INTERGENIC
SBS Chr1 37464951 A-G Hetero INTERGENIC
SBS Chr2 12836557 T-C Hetero INTERGENIC
SBS Chr2 13598125 C-T Hetero INTERGENIC
SBS Chr2 16779072 C-A Hetero INTERGENIC
SBS Chr2 21321904 G-A Hetero INTRON
SBS Chr2 26904638 A-T Hetero INTERGENIC
SBS Chr3 2115962 C-T Hetero INTERGENIC
SBS Chr3 7237537 C-T Homo INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr4 547318 G-C Homo INTRON
SBS Chr4 15312167 C-G Homo INTERGENIC
SBS Chr4 17009729 C-T Homo INTERGENIC
SBS Chr5 9863698 G-A Homo INTRON
SBS Chr5 15204104 A-T Homo INTERGENIC
SBS Chr6 14763447 T-C Hetero INTERGENIC
SBS Chr6 26524905 A-T Homo INTERGENIC
SBS Chr7 18460929 A-T Hetero INTRON
SBS Chr7 23678617 G-T Hetero INTERGENIC
SBS Chr7 27652163 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g258000
SBS Chr9 16238343 T-C Homo INTERGENIC
SBS Chr9 20503510 A-G Hetero INTERGENIC
SBS Chr10 11218729 A-T Homo INTERGENIC
SBS Chr10 12338489 C-T Homo INTERGENIC
SBS Chr10 12849800 G-A Homo INTERGENIC
SBS Chr10 18765574 G-A Hetero INTERGENIC
SBS Chr11 11960885 G-A Homo INTERGENIC
SBS Chr11 12950604 C-G Hetero INTERGENIC
SBS Chr11 22996483 C-T Hetero INTRON
SBS Chr11 24871298 C-G Hetero INTERGENIC
SBS Chr12 14293095 T-C Hetero INTERGENIC
SBS Chr12 23303569 G-T Hetero INTERGENIC
SBS Chr12 26499389 T-G Hetero INTERGENIC

Deletions: 37

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 352001 385000 32999 OsKitaake01g005200
Deletion Chr5 1365001 1383000 17999 OsKitaake05g017100
Deletion Chr1 1987462 1987468 6 OsKitaake01g023900
Deletion Chr9 2347545 2347546 1
Deletion Chr8 4777001 4782000 4999 OsKitaake08g054300
Deletion Chr8 4831893 4831895 2
Deletion Chr10 4852850 4852860 10
Deletion Chr9 5088955 5088965 10
Deletion Chr3 5167317 5167320 3
Deletion Chr9 5789001 5818000 28999 2
Deletion Chr3 6094001 6108000 13999 OsKitaake03g087400
Deletion Chr10 10482001 10498000 15999 OsKitaake10g061300
Deletion Chr10 10516209 10516214 5
Deletion Chr11 13117023 13117024 1
Deletion Chr1 13460001 13471000 10999 OsKitaake01g156600
Deletion Chr1 13520001 13560000 39999 5
Deletion Chr1 14678001 14695000 16999 OsKitaake01g166200
Deletion Chr1 16663001 16687000 23999 OsKitaake01g177400
Deletion Chr3 16708001 16718000 9999 OsKitaake03g210400
Deletion Chr10 17480001 17492000 11999 OsKitaake10g119300
Deletion Chr9 19567521 19567526 5
Deletion Chr4 20712001 20724000 11999 2
Deletion Chr4 22735001 22755000 19999 8
Deletion Chr7 22893001 22906000 12999 OsKitaake07g197200
Deletion Chr11 23564165 23564169 4
Deletion Chr3 24062001 24072000 9999 OsKitaake03g257300
Deletion Chr1 25535087 25535089 2
Deletion Chr12 26720001 26740000 19999 OsKitaake12g222100
Deletion Chr1 26766001 26818000 51999 7
Deletion Chr4 27662001 27674000 11999 OsKitaake04g203600
Deletion Chr2 27673001 27691000 17999 2
Deletion Chr3 31399001 31407000 7999 2
Deletion Chr4 32695995 32695996 1
Deletion Chr1 33455001 33473000 17999 OsKitaake01g342500
Deletion Chr3 34830001 34848000 17999 2
Deletion Chr1 35586001 35595000 8999 OsKitaake01g376800
Deletion Chr1 38703001 38714000 10999 OsKitaake01g413900

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29709368 29709371 2
Insertion Chr8 11655385 11655388 2
Insertion Chr11 14261831 14261834 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 5788952 5939061 OsKitaake09g034600
Inversion Chr9 5817640 5939077 OsKitaake09g034600
Inversion Chr3 15601536 16139957 2
Inversion Chr9 20934831 21047054
Inversion Chr9 20934834 21047057

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 5492165 Chr1 39551445 OsKitaake01g427050
Translocation Chr6 5492189 Chr1 39552548 OsKitaake01g427100
Translocation Chr3 12103720 Chr1 39554055 OsKitaake01g427200
Translocation Chr3 16139961 Chr1 39552562 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26660391	T-A	Hetero	INTERGENIC
SBS	Chr1	37464951	A-G	Hetero	INTERGENIC
SBS	Chr2	12836557	T-C	Hetero	INTERGENIC
SBS	Chr2	13598125	C-T	Hetero	INTERGENIC
SBS	Chr2	16779072	C-A	Hetero	INTERGENIC
SBS	Chr2	21321904	G-A	Hetero	INTRON
SBS	Chr2	26904638	A-T	Hetero	INTERGENIC
SBS	Chr3	2115962	C-T	Hetero	INTERGENIC
SBS	Chr3	7237537	C-T	Homo	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr4	547318	G-C	Homo	INTRON
SBS	Chr4	15312167	C-G	Homo	INTERGENIC
SBS	Chr4	17009729	C-T	Homo	INTERGENIC
SBS	Chr5	9863698	G-A	Homo	INTRON
SBS	Chr5	15204104	A-T	Homo	INTERGENIC
SBS	Chr6	14763447	T-C	Hetero	INTERGENIC
SBS	Chr6	26524905	A-T	Homo	INTERGENIC
SBS	Chr7	18460929	A-T	Hetero	INTRON
SBS	Chr7	23678617	G-T	Hetero	INTERGENIC
SBS	Chr7	27652163	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g258000
SBS	Chr9	16238343	T-C	Homo	INTERGENIC
SBS	Chr9	20503510	A-G	Hetero	INTERGENIC
SBS	Chr10	11218729	A-T	Homo	INTERGENIC
SBS	Chr10	12338489	C-T	Homo	INTERGENIC
SBS	Chr10	12849800	G-A	Homo	INTERGENIC
SBS	Chr10	18765574	G-A	Hetero	INTERGENIC
SBS	Chr11	11960885	G-A	Homo	INTERGENIC
SBS	Chr11	12950604	C-G	Hetero	INTERGENIC
SBS	Chr11	22996483	C-T	Hetero	INTRON
SBS	Chr11	24871298	C-G	Hetero	INTERGENIC
SBS	Chr12	14293095	T-C	Hetero	INTERGENIC
SBS	Chr12	23303569	G-T	Hetero	INTERGENIC
SBS	Chr12	26499389	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	352001	385000	32999	OsKitaake01g005200
Deletion	Chr5	1365001	1383000	17999	OsKitaake05g017100
Deletion	Chr1	1987462	1987468	6	OsKitaake01g023900
Deletion	Chr9	2347545	2347546	1
Deletion	Chr8	4777001	4782000	4999	OsKitaake08g054300
Deletion	Chr8	4831893	4831895	2
Deletion	Chr10	4852850	4852860	10
Deletion	Chr9	5088955	5088965	10
Deletion	Chr3	5167317	5167320	3
Deletion	Chr9	5789001	5818000	28999	2
Deletion	Chr3	6094001	6108000	13999	OsKitaake03g087400
Deletion	Chr10	10482001	10498000	15999	OsKitaake10g061300
Deletion	Chr10	10516209	10516214	5
Deletion	Chr11	13117023	13117024	1
Deletion	Chr1	13460001	13471000	10999	OsKitaake01g156600
Deletion	Chr1	13520001	13560000	39999	5
Deletion	Chr1	14678001	14695000	16999	OsKitaake01g166200
Deletion	Chr1	16663001	16687000	23999	OsKitaake01g177400
Deletion	Chr3	16708001	16718000	9999	OsKitaake03g210400
Deletion	Chr10	17480001	17492000	11999	OsKitaake10g119300
Deletion	Chr9	19567521	19567526	5
Deletion	Chr4	20712001	20724000	11999	2
Deletion	Chr4	22735001	22755000	19999	8
Deletion	Chr7	22893001	22906000	12999	OsKitaake07g197200
Deletion	Chr11	23564165	23564169	4
Deletion	Chr3	24062001	24072000	9999	OsKitaake03g257300
Deletion	Chr1	25535087	25535089	2
Deletion	Chr12	26720001	26740000	19999	OsKitaake12g222100
Deletion	Chr1	26766001	26818000	51999	7
Deletion	Chr4	27662001	27674000	11999	OsKitaake04g203600
Deletion	Chr2	27673001	27691000	17999	2
Deletion	Chr3	31399001	31407000	7999	2
Deletion	Chr4	32695995	32695996	1
Deletion	Chr1	33455001	33473000	17999	OsKitaake01g342500
Deletion	Chr3	34830001	34848000	17999	2
Deletion	Chr1	35586001	35595000	8999	OsKitaake01g376800
Deletion	Chr1	38703001	38714000	10999	OsKitaake01g413900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5788952	5939061	OsKitaake09g034600
Inversion	Chr9	5817640	5939077	OsKitaake09g034600
Inversion	Chr3	15601536	16139957	2
Inversion	Chr9	20934831	21047054
Inversion	Chr9	20934834	21047057

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes